CX300108

Overview
NameCX300108
Unique NameCX300108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length334
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300108 vs. ExPASy Swiss-Prot
Match: RL20_DEIRA (50S ribosomal protein L20 OS=Deinococcus radiodurans GN=rplT PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.176e-13
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 2
Query:   56 RRINAGSRHHGVNYGDFMHGLMRENIQLNWKVLSKLSMHEPYRFKALVYICRPA 217
            +RINAG+R HG+NY  F++GL R NI LN KVL+ ++  EP  FKALV   R A
Sbjct:   63 QRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDASRNA 116          

HSP 2 Score: 35.8094 bits (81), Expect = 1.176e-13
Identity = 15/19 (78.95%), Postives = 15/19 (78.95%), Query Frame = 1
Query:    1 YSY*DRRNKKRDMRSLWIQ 57
            Y Y DRRNKKRD R LWIQ
Sbjct:   45 YEYRDRRNKKRDFRRLWIQ 63          
BLAST of CX300108 vs. ExPASy Swiss-Prot
Match: RL20_RHOCS (50S ribosomal protein L20 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplT PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 7.326e-13
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 2
Query:   56 RRINAGSRHHGVNYGDFMHGLMRENIQLNWKVLSKLSMHEPYRFKALV 199
            +RINAG+R HG+ Y  FMHGL R  I+++ KVLS ++  EP  FKALV
Sbjct:   63 QRINAGARLHGLTYSKFMHGLKRAGIEVDRKVLSDIAAREPESFKALV 110          

HSP 2 Score: 35.4242 bits (80), Expect = 7.326e-13
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 1
Query:    1 YSY*DRRNKKRDMRSLWIQ 57
            Y+Y DRRN+KRD R LWIQ
Sbjct:   45 YAYRDRRNRKRDFRGLWIQ 63          
BLAST of CX300108 vs. ExPASy Swiss-Prot
Match: RL20_DEIDV (50S ribosomal protein L20 OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=rplT PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 3.534e-12
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 2
Query:   56 RRINAGSRHHGVNYGDFMHGLMRENIQLNWKVLSKLSMHEPYRFKALV 199
            +RINAG+R HG+NY  F+ GL R  + LN KVL+ ++  EP  FKALV
Sbjct:   63 QRINAGARLHGMNYSTFIGGLKRAGVDLNRKVLADIAAREPEAFKALV 110          

HSP 2 Score: 35.4242 bits (80), Expect = 3.534e-12
Identity = 14/19 (73.68%), Postives = 15/19 (78.95%), Query Frame = 1
Query:    1 YSY*DRRNKKRDMRSLWIQ 57
            Y Y DRRNKKRD R LW+Q
Sbjct:   45 YEYRDRRNKKRDFRRLWVQ 63          
BLAST of CX300108 vs. ExPASy Swiss-Prot
Match: RL20_DEIGD (50S ribosomal protein L20 OS=Deinococcus geothermalis (strain DSM 11300) GN=rplT PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 2.195e-11
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 2
Query:   56 RRINAGSRHHGVNYGDFMHGLMRENIQLNWKVLSKLSMHEPYRFKALVYICRPAFSG 226
            +RINAG+R HG+NY  F++GL    + LN KVL+ ++  EP  F+ LV   + A +G
Sbjct:   63 QRINAGARLHGMNYSTFINGLKVAGVDLNRKVLADIAAREPEAFQVLVNTAKGARNG 119          

HSP 2 Score: 35.8094 bits (81), Expect = 2.195e-11
Identity = 15/19 (78.95%), Postives = 15/19 (78.95%), Query Frame = 1
Query:    1 YSY*DRRNKKRDMRSLWIQ 57
            Y Y DRRNKKRD R LWIQ
Sbjct:   45 YEYRDRRNKKRDFRRLWIQ 63          
BLAST of CX300108 vs. ExPASy Swiss-Prot
Match: RL20_MARMM (50S ribosomal protein L20 OS=Maricaulis maris (strain MCS10) GN=rplT PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 2.203e-11
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 2
Query:   56 RRINAGSRHHGVNYGDFMHGLMRENIQLNWKVLSKLSMHEPYRFKALVYICRPA 217
            +RINAG+R H ++Y  FM+GL +  I+++ KVL+ ++MHEP  FKALV   R A
Sbjct:   63 QRINAGARQHEMSYSVFMNGLTKAGIEVDRKVLADIAMHEPDAFKALVDQARAA 116          

HSP 2 Score: 31.9574 bits (71), Expect = 2.203e-11
Identity = 13/19 (68.42%), Postives = 16/19 (84.21%), Query Frame = 1
Query:    1 YSY*DRRNKKRDMRSLWIQ 57
            Y+Y DRR KKR+ R+LWIQ
Sbjct:   45 YAYRDRRAKKRNFRALWIQ 63          
BLAST of CX300108 vs. ExPASy Swiss-Prot
Match: RL20_MESSB (50S ribosomal protein L20 OS=Mesorhizobium sp. (strain BNC1) GN=rplT PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 8.012e-11
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 2
Query:   56 RRINAGSRHHGVNYGDFMHGLMRENIQLNWKVLSKLSMHEPYRFKALVYICRPAFSGNKN 235
            +RINA +R HG+ YG F+ GL +  I+++ KVL+ +++HEP  F ALV   + +    KN
Sbjct:   63 QRINAATREHGLTYGRFIDGLNKAGIEIDRKVLADMAVHEPQAFAALVAKSKASLEYLKN 122          

HSP 2 Score: 32.7278 bits (73), Expect = 8.012e-11
Identity = 12/19 (63.16%), Postives = 17/19 (89.47%), Query Frame = 1
Query:    1 YSY*DRRNKKRDMRSLWIQ 57
            Y+Y DR+N+KR+ R+LWIQ
Sbjct:   45 YAYRDRKNRKRNFRALWIQ 63          
The following BLAST results are available for this feature:
BLAST of CX300108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RL20_DEIRA1.176e-1355.5650S ribosomal protein L20 OS=Deinococcus radiodura... [more]
RL20_RHOCS7.326e-1356.2550S ribosomal protein L20 OS=Rhodospirillum centen... [more]
RL20_DEIDV3.534e-1254.1750S ribosomal protein L20 OS=Deinococcus deserti (... [more]
RL20_DEIGD2.195e-1143.8650S ribosomal protein L20 OS=Deinococcus geotherma... [more]
RL20_MARMM2.203e-1150.0050S ribosomal protein L20 OS=Maricaulis maris (str... [more]
RL20_MESSB8.012e-1141.6750S ribosomal protein L20 OS=Mesorhizobium sp. (st... [more]
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Properties
Property NameValue
Genbank descriptionC07006B10SK SaltLeaf1 Citrus clementina cDNA clone C07006B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300108 ID=CX300108; Name=CX300108; organism=Citrus clementina; type=EST; length=334bp
TATTCCTACTGAGACCGGCGCAACAAGAAGCGTGACATGCGCTCCCTTTG
GATTCAGACGCATCAACGCCGGCTCTCGCCATCACGGCGTTAACTATGGT
GACTTTATGCATGGACTGATGAGGGAGAACATCCAGCTGAACTGGAAGGT
TCTGTCAAAGCTGTCTATGCATGAACCATATAGGTTCAAGGCCCTTGTAT
ACATATGTCGCCCTGCCTTCTCTGGAAACAAAAATGTGTGTGCATGCTCC
CAGAAAGGCTGACGTTTCAATCAATGCGTACTTAGTAATTAGTGACCCGA
CTATTGCATTCTTTAGTATTTGAATATTACTGGA
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