CX300109

Overview
NameCX300109
Unique NameCX300109
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length571
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300109 vs. ExPASy Swiss-Prot
Match: CCC11_ARATH (Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 4.476e-40
Identity = 75/102 (73.53%), Postives = 91/102 (89.22%), Query Frame = 2
Query:    2 LVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYENQRLVSEERINAAFGKLALK 307
            L +FLQDA +ND+NM  ++WGI+NDTYKMDLILVHPP+ IALACIYIASV+REKD TAWFE+L  DMN+VKNI+MEILDFYEN R ++EE++N+AF KLALK
Sbjct:  151 LSEFLQDAALNDVNMNQITWGIVNDTYKMDLILVHPPYRIALACIYIASVHREKDITAWFEDLHEDMNLVKNIAMEILDFYENYRTITEEKVNSAFSKLALK 252          
BLAST of CX300109 vs. ExPASy Swiss-Prot
Match: CCC12_ARATH (Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.789e-39
Identity = 73/100 (73.00%), Postives = 89/100 (89.00%), Query Frame = 2
Query:    2 LVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYENQRLVSEERINAAFGKLA 301
            L +FLQD+G+ND +MTHL+WG++NDTY+MDLIL+HPP LI LACIYIASV++EKD   WFEEL VDMN+VKNI+MEILDFYEN RL +EER++AAF KLA
Sbjct:  151 LPEFLQDSGINDTSMTHLTWGLVNDTYRMDLILIHPPFLITLACIYIASVHKEKDIKTWFEELSVDMNIVKNIAMEILDFYENHRLFTEERVHAAFNKLA 250          
BLAST of CX300109 vs. ExPASy Swiss-Prot
Match: CCC11_ORYSJ (Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os09g0504400 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.705e-31
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 2
Query:    2 LVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYEN-----QRLVSEERINAAFGKLALK 307
            L+Q LQDAG+ D+  T  +WGI+NDTYKMDLIL+HPP++IALACIYIASV ++KD T WFEELRVDMN+VKNISMEILDFY+      QR + E++I     KL  K
Sbjct:  152 LLQLLQDAGITDL--TQFAWGIVNDTYKMDLILIHPPYMIALACIYIASVLKDKDITLWFEELRVDMNIVKNISMEILDFYDTYKIDPQRGLPEDKIAPVMNKLPSK 256          
BLAST of CX300109 vs. ExPASy Swiss-Prot
Match: CCNC_RAT (Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.451e-16
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = 2
Query:    2 LVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYENQRLVSEER 274
            L+Q++QD G  D+ +  L+W I+NDTY+ DL L++PP +IALAC+++A V ++KD   WF EL VDM  +  I   IL  YE  +   E +
Sbjct:  154 LLQYVQDMGQEDV-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERK 243          
BLAST of CX300109 vs. ExPASy Swiss-Prot
Match: CCNC_MOUSE (Cyclin-C OS=Mus musculus GN=Ccnc PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 3.451e-16
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = 2
Query:    2 LVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYENQRLVSEER 274
            L+Q++QD G  D+ +  L+W I+NDTY+ DL L++PP +IALAC+++A V ++KD   WF EL VDM  +  I   IL  YE  +   E +
Sbjct:  159 LLQYVQDMGQEDV-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERK 248          
BLAST of CX300109 vs. ExPASy Swiss-Prot
Match: CCNC_XENTR (Cyclin-C OS=Xenopus tropicalis GN=ccnc PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.887e-16
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = 2
Query:    2 LVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYENQRLVSEER 274
            L+Q++QD G  D+ +  L+W I+NDTY+ DL L++PP +IALAC+++A V ++KD   WF EL VDM  +  I   IL  YE  +   E +
Sbjct:  159 LLQYVQDMGQEDM-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERK 248          
BLAST of CX300109 vs. ExPASy Swiss-Prot
Match: CCNC_XENLA (Cyclin-C OS=Xenopus laevis GN=ccnc PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.887e-16
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = 2
Query:    2 LVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYENQRLVSEER 274
            L+Q++QD G  D+ +  L+W I+NDTY+ DL L++PP +IALAC+++A V ++KD   WF EL VDM  +  I   IL  YE  +   E +
Sbjct:  159 LLQYVQDMGQEDM-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERK 248          
BLAST of CX300109 vs. ExPASy Swiss-Prot
Match: CCNC_HUMAN (Cyclin-C OS=Homo sapiens GN=CCNC PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.887e-16
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = 2
Query:    2 LVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYENQRLVSEER 274
            L+Q++QD G  D+ +  L+W I+NDTY+ DL L++PP +IALAC+++A V ++KD   WF EL VDM  +  I   IL  YE  +   E +
Sbjct:  159 LLQYVQDMGQEDM-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERK 248          
BLAST of CX300109 vs. ExPASy Swiss-Prot
Match: CCNC_CHICK (Cyclin-C OS=Gallus gallus GN=CCNC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.887e-16
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = 2
Query:    2 LVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYENQRLVSEER 274
            L+Q++QD G  D+ +  L+W I+NDTY+ DL L++PP +IALAC+++A V ++KD   WF EL VDM  +  I   IL  YE  +   E +
Sbjct:  159 LLQYVQDMGQEDM-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERK 248          
BLAST of CX300109 vs. ExPASy Swiss-Prot
Match: CCNC_BOVIN (Cyclin-C OS=Bos taurus GN=CCNC PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.887e-16
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = 2
Query:    2 LVQFLQDAGMNDINMTHLSWGILNDTYKMDLILVHPPHLIALACIYIASVYREKDNTAWFEELRVDMNVVKNISMEILDFYENQRLVSEER 274
            L+Q++QD G  D+ +  L+W I+NDTY+ DL L++PP +IALAC+++A V ++KD   WF EL VDM  +  I   IL  YE  +   E +
Sbjct:  159 LLQYVQDMGQEDM-LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERK 248          
The following BLAST results are available for this feature:
BLAST of CX300109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CCC11_ARATH4.476e-4073.53Cyclin-C1-1 OS=Arabidopsis thaliana GN=CYCC1-1 PE=... [more]
CCC12_ARATH3.789e-3973.00Cyclin-C1-2 OS=Arabidopsis thaliana GN=CYCC1-2 PE=... [more]
CCC11_ORYSJ1.705e-3163.55Cyclin-C1-1 OS=Oryza sativa subsp. japonica GN=Os0... [more]
CCNC_RAT3.451e-1643.96Cyclin-C OS=Rattus norvegicus GN=Ccnc PE=2 SV=2[more]
CCNC_MOUSE3.451e-1643.96Cyclin-C OS=Mus musculus GN=Ccnc PE=2 SV=3[more]
CCNC_XENTR5.887e-1643.96Cyclin-C OS=Xenopus tropicalis GN=ccnc PE=2 SV=1[more]
CCNC_XENLA5.887e-1643.96Cyclin-C OS=Xenopus laevis GN=ccnc PE=2 SV=1[more]
CCNC_HUMAN5.887e-1643.96Cyclin-C OS=Homo sapiens GN=CCNC PE=1 SV=2[more]
CCNC_CHICK5.887e-1643.96Cyclin-C OS=Gallus gallus GN=CCNC PE=3 SV=1[more]
CCNC_BOVIN5.887e-1643.96Cyclin-C OS=Bos taurus GN=CCNC PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC07006B11SK SaltLeaf1 Citrus clementina cDNA clone C07006B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300109 ID=CX300109; Name=CX300109; organism=Citrus clementina; type=EST; length=571bp
ACTTGTGCAGTTTTTGCAGGACGCTGGCATGAATGATATAAATATGACCC
ATTTATCTTGGGGAATTCTGAACGACACATATAAGATGGACCTTATTCTT
GTACATCCTCCACATTTGATTGCTTTGGCTTGCATATATATTGCCAGTGT
ATATAGAGAAAAAGATAACACCGCATGGTTTGAAGAGCTTCGTGTTGATA
TGAATGTGGTGAAAAACATCTCAATGGAGATATTAGATTTTTATGAAAAC
CAAAGACTGGTTAGTGAGGAGAGAATAAATGCTGCCTTCGGCAAATTGGC
TTTGAAGACTTAAATGGCTAGGTGACTCTGCTGCTTTGCTAGATACCACC
CTCTGTGTTGTATCGAAAATAGGGATGATTGATTAATATGAAGTATCTGG
TCGTGGTGTAGGCAATCGTAAAATCATCAATCCTTTGATTCTCTAATCCT
TTGAGCACAGCTATACGCTCCTGGTACAGGTGGCATTTTCCATAAGGCAG
TCATATCATATATGAGGAACAGGTAATGTAGTTAAAATTAGTGTTAATAA
ACTTTTATAACCTTTTATAAT
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