CX300117

Overview
NameCX300117
Unique NameCX300117
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length338
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300117 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.946e-20
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 3
Query:    3 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 140
            NGRLAMLAVMGAWFQHIYTGTGPIDNL AHLADPGHAT+FAAF+PK
Sbjct:  225 NGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFSPK 270          
BLAST of CX300117 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.946e-20
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 3
Query:    3 NGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 140
            NGRLAMLAVMGAWFQHIYTGTGPIDNL AHLADPGHAT+FAAF+PK
Sbjct:  225 NGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFSPK 270          
The following BLAST results are available for this feature:
BLAST of CX300117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CB12_SOLLC3.946e-2093.48Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY3.946e-2093.48Chlorophyll a-b binding protein, chloroplastic OS=... [more]
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Properties
Property NameValue
Genbank descriptionC07006D02SK SaltLeaf1 Citrus clementina cDNA clone C07006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300117 ID=CX300117; Name=CX300117; organism=Citrus clementina; type=EST; length=338bp
AGAATGGAAGATTGGCTATGTTGGCTGTGATGGGTGCTTGGTTCCAGCAC
ATTTACACCGGCACCGGCCCCATTGACAATCTCATTGCCCACCTTGCTGA
TCCTGGTCATGCCACCGTTTTTGCTGCCTTCACCCCCAAGTGAGATGATG
ACGAGCAAAGGGAGAGAAATTTGGGCCAAGAGGAAGCTTGAGATCAAAGG
AATTGGTGTTTCTCTTAGGGAAAGGTTGTATGATTAGAACTTGTATTAAT
TGCCTCTATCTATGTACAAAGACTTGTGTGATCACTTAGATGCCATGAAT
ATAAAAAATATTCAGGTGGAAAAAAAAAAAAAAAAAAA
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