CX300131

Overview
NameCX300131
Unique NameCX300131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:1020..1522. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.225e-34
Identity = 72/99 (72.73%), Postives = 74/99 (74.75%), Query Frame = 2
Query:    2 PNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 298
            PN          SKKTFAEEVNAAFRESADNELKGILSVCDEPLVS+DFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVAN W+
Sbjct:  303 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ 401          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 6.080e-34
Identity = 71/99 (71.72%), Postives = 73/99 (73.74%), Query Frame = 2
Query:    2 PNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 298
            PN          SKKTFAEEVNAAFR+SA+ ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  298 PNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 396          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.037e-33
Identity = 71/99 (71.72%), Postives = 72/99 (72.73%), Query Frame = 2
Query:    2 PNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 298
            PN          SKKTFAEEVNAAFRE+AD ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVAN WK
Sbjct:  294 PNVSVVDLVVQVSKKTFAEEVNAAFREAADKELKGILDVCDEPLVSVDFRCSDVSSTVDASLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQWK 392          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.354e-33
Identity = 70/99 (70.71%), Postives = 73/99 (73.74%), Query Frame = 2
Query:    2 PNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 298
            PN          SKKTFAEEVNAAFR++A+ ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  135 PNVSVVDLVVQVSKKTFAEEVNAAFRDAAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 233          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.147e-32
Identity = 70/99 (70.71%), Postives = 71/99 (71.72%), Query Frame = 2
Query:    2 PNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 298
            PN          SKKTFAEEVN AFRESA  EL GILSVCDEPLVSVDFRC              MGDD+VKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct:  307 PNVSVVDLVVQVSKKTFAEEVNEAFRESAAKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDLVKVIAWYDNEWGYSQRVVDLADIVANNWK 405          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.024e-29
Identity = 64/99 (64.65%), Postives = 67/99 (67.68%), Query Frame = 2
Query:    2 PNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 298
            PN          SKKT AEEVN AFR++A NEL GIL VCD PLVSVDFRC              MGDDMVKVI+WYDNEWGYSQRVVDLADI AN WK
Sbjct:  305 PNVSVVDLVVQVSKKTLAEEVNQAFRDAAANELTGILEVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVISWYDNEWGYSQRVVDLADICANQWK 403          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.511e-28
Identity = 57/81 (70.37%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   53 AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 295
            AE+VNAAFR++AD  LKG+L+VCDEPLVSVDFRC              MGDDMVKV+AWYDNEWGYSQRVVDLA +VANNW
Sbjct:  311 AEDVNAAFRKAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANNW 391          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.666e-26
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = 2
Query:   41 KKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 295
            KKTFAEEVNAAFRE+A+  +KG+L V D PLVS+DF+C              MGDDMVKV+AWYDNEWGYSQRVVDLA++ A  W
Sbjct:  288 KKTFAEEVNAAFREAANGPMKGVLHVEDAPLVSIDFKCTDQSTSIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAEVTAKKW 372          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 6.094e-26
Identity = 55/81 (67.90%), Postives = 61/81 (75.31%), Query Frame = 2
Query:   53 AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 295
            AE+VNAAFR++A+  LKGIL VCD PLVSVDFRC              MGDDMVKV+AWYDNEWGYSQRVVDLA +VAN W
Sbjct:  342 AEDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKW 422          
BLAST of CX300131 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.501e-24
Identity = 53/81 (65.43%), Postives = 59/81 (72.84%), Query Frame = 2
Query:   53 AEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 295
            AE+VN AFR++A   LKG+L VCD PLVSVDFRC              MG DMVKV+AWYDNEWGYSQRVVDLAD+VAN W
Sbjct:  341 AEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSSTIDSSLTMVMGGDMVKVVAWYDNEWGYSQRVVDLADLVANKW 421          
The following BLAST results are available for this feature:
BLAST of CX300131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
G3PA_SPIOL1.225e-3472.73Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH6.080e-3471.72Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC1.037e-3371.72Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SINAL1.354e-3370.71Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA1.147e-3270.71Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE2.024e-2964.65Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_TOBAC6.511e-2870.37Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_CHLRE4.666e-2663.53Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_PEA6.094e-2667.90Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_SPIOL1.501e-2465.43Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionC07006E08SK SaltLeaf1 Citrus clementina cDNA clone C07006E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300131 ID=CX300131; Name=CX300131; organism=Citrus clementina; type=EST; length=503bp
ACCAAACGTCTCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCT
TCGCAGAAGAGGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTG
AAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAG
GTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACACTTGTCATGG
GAGACGACATGGTTAAGGTGATTGCATGGTATGACAATGAATGGGGTTAC
TCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAACTGGAAGTG
AAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAACGATGTTCT
TGTTTTTCATTTTTGGTTCCCCCATTTATTGTTCTGCGTCTTAGAATTTG
TAGAATGTATAACACTATCTTATTATGGAACCTTTTTCCTTTGCCTGTCA
TTAATCATTATGCAATAAAATTCTTACATTAAAGTTGAAAAAAAAAAAAA
AAA
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