CX300134

Overview
NameCX300134
Unique NameCX300134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300134_ssr191 microsatellite CX300134_ssr191:191..202. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2562 contig Ccv1_Contig2562:495..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300134 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.124e-13
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 3
Query:    3 AACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 140
            AACNCLK A+ +I+G+  N+AAGLP +CGV +PYKISPSTDC  V+
Sbjct:   46 AACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CX300134 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11
Identity = 32/45 (71.11%), Postives = 34/45 (75.56%), Query Frame = 3
Query:    6 ACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 140
            AC CLK A G I GI    AAGLPS CGV IPYKISPSTDCS+V+
Sbjct:   70 ACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CX300134 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.413e-11
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 3
Query:    6 ACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 140
            ACNCLK   G+I G+ PN AAGLP +CGV +PYKIS ST+C+ V+
Sbjct:   71 ACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CX300134 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.458e-11
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 3
Query:    3 AACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 140
            AAC CLK AY +I G+    AA  P +CGV IPYKISPSTDCS+V+
Sbjct:   71 AACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CX300134 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.822e-11
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 3
Query:    3 AACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 140
            AACNCLK+  G+I G+ PN AA LP +CGV +PYKIS ST+C+ V+
Sbjct:   46 AACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CX300134 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.604e-11
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = 3
Query:    6 ACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 140
            AC CLK A   I+GI    AAGLP  CGV IPYKISPSTDCS+V+
Sbjct:   70 ACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CX300134 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.604e-11
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 3
Query:    3 AACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 140
            AACNCLK+   ++ G+ PN AA LP +CGV IPY+ISPST+C+ V+
Sbjct:   72 AACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CX300134 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 3
Query:    6 ACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 137
            AC CLK+    + G+  N AAGLP++CGV IPYKISP+TDC+RV
Sbjct:   76 ACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CX300134 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 3
Query:    6 ACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 140
            ACNCLK+  G+I G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   47 ACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
The following BLAST results are available for this feature:
BLAST of CX300134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
LTP1_MORNI8.124e-1365.22Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP1_TOBAC1.173e-1171.11Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP_MALDO3.413e-1162.22Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP_HELAN4.458e-1163.04Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDO5.822e-1160.87Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP2_TOBAC7.604e-1166.67Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP1_PRUDU7.604e-1158.70Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_DAUCA9.931e-1161.36Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP1_PRUAR9.931e-1162.22Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
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Properties
Property NameValue
Genbank descriptionC07006F02SK SaltLeaf1 Citrus clementina cDNA clone C07006F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300134 ID=CX300134; Name=CX300134; organism=Citrus clementina; type=EST; length=378bp
AAGCTGCATGCAACTGCTTGAAACGAGCTTACGGAACAATCCGCGGCATC
AAACCTAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGAGTCAGAATTCC
TTACAAGATCAGCCCCAGCACCGACTGCTCTAGGGTCAGGTGAAGTTGAG
TTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAATAAATAAA
TAAAGAATATCTATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTAT
GAGTTTCACTCTCATGTCATGTTTGTATATTTGCTTTTTATGTCATATTA
AATATGTAAACGCGATCTGTGTTTTGAGTGATTAATTATAGTTATTTTGT
GGTATTATCTTAAAAAAAAAAAAAAAAA
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