CX300146

Overview
NameCX300146
Unique NameCX300146
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig90 contig Ccv1_Contig90:738..1156. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300146 vs. ExPASy Swiss-Prot
Match: CAHC_PEA (Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.788e-34
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 1
Query:    1 IEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLNNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDF 237
            IE+WVKIG+PAK+KV  +HGD PF + CT+CEKEAVN SL NLLTYPFVREGLVNKTLALKGGYYDFV GSFELWGL+F
Sbjct:  242 IEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLEF 320          
BLAST of CX300146 vs. ExPASy Swiss-Prot
Match: CAHC_TOBAC (Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.376e-33
Identity = 66/79 (83.54%), Postives = 70/79 (88.61%), Query Frame = 1
Query:    1 IEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLNNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDF 237
            IEDWVKIG+PAK+KV  EH DK F DQCT CEKEAVNVSL NLLTYPFVREGLV KTLALKGG+YDFVNG FELWGL+F
Sbjct:  235 IEDWVKIGLPAKAKVQGEHVDKCFADQCTACEKEAVNVSLGNLLTYPFVREGLVKKTLALKGGHYDFVNGGFELWGLEF 313          
BLAST of CX300146 vs. ExPASy Swiss-Prot
Match: CAHC_SPIOL (Carbonic anhydrase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 6.913e-33
Identity = 63/79 (79.75%), Postives = 71/79 (89.87%), Query Frame = 1
Query:    1 IEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLNNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDF 237
            IEDWVKI +PAK KVL EHG+  F +QCT+CEKEAVNVSL NLLTYPFVR+GLV KTLAL+GGYYDFVNGSFELWGL++
Sbjct:  233 IEDWVKICLPAKHKVLAEHGNATFAEQCTHCEKEAVNVSLGNLLTYPFVRDGLVKKTLALQGGYYDFVNGSFELWGLEY 311          
BLAST of CX300146 vs. ExPASy Swiss-Prot
Match: CAHC_ARATH (Carbonic anhydrase, chloroplastic OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 1.883e-30
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = 1
Query:    1 IEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLNNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDF 237
            IEDWVKI +PAKSKV++E GD  F DQC  CE+EAVNVSL NLLTYPFVREGLV  TLALKGGYYDFV G+FELWGL+F
Sbjct:  250 IEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKGGYYDFVKGAFELWGLEF 328          
BLAST of CX300146 vs. ExPASy Swiss-Prot
Match: CAHX_FLABI (Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.211e-30
Identity = 60/79 (75.95%), Postives = 66/79 (83.54%), Query Frame = 1
Query:    1 IEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLNNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDF 237
            IEDWVK+ +PAKSKV+ EH      DQC  CEKEAVNVSL NLLTYPFVR+GL NKTLALKGG+YDFVNG+FELW LDF
Sbjct:  244 IEDWVKVCLPAKSKVVAEHNGTHLDDQCVLCEKEAVNVSLGNLLTYPFVRDGLRNKTLALKGGHYDFVNGTFELWALDF 322          
BLAST of CX300146 vs. ExPASy Swiss-Prot
Match: CAHX_FLAPR (Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.220e-29
Identity = 59/79 (74.68%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    1 IEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLNNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDF 237
            IEDWVK+ +PAKSKV+ EH      DQC  CEKEAVNVSL NLLTYPFVR+GL N TLALKGG+YDFVNG+FELW LDF
Sbjct:  243 IEDWVKVCLPAKSKVVAEHNGTHLDDQCVLCEKEAVNVSLGNLLTYPFVRDGLRNNTLALKGGHYDFVNGTFELWALDF 321          
BLAST of CX300146 vs. ExPASy Swiss-Prot
Match: CAHX_FLABR (Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.220e-29
Identity = 59/79 (74.68%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    1 IEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLNNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDF 237
            IEDWVK+ +PAKSKV+ EH      DQC  CEKEAVNVSL NLLTYPFVR+GL N TLALKGG+YDFVNG+FELW LDF
Sbjct:  244 IEDWVKVCLPAKSKVVAEHNGTHLDDQCVLCEKEAVNVSLGNLLTYPFVRDGLRNNTLALKGGHYDFVNGTFELWALDF 322          
BLAST of CX300146 vs. ExPASy Swiss-Prot
Match: CAH1_FLALI (Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.220e-29
Identity = 59/79 (74.68%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    1 IEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLNNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDF 237
            IEDWVK+ +PAKSKV+ EH      DQC  CEKEAVNVSL NLLTYPFVR+GL N TLALKGG+YDFVNG+FELW LDF
Sbjct:  244 IEDWVKVCLPAKSKVVAEHNGTHLDDQCVQCEKEAVNVSLGNLLTYPFVRDGLRNNTLALKGGHYDFVNGTFELWALDF 322          
BLAST of CX300146 vs. ExPASy Swiss-Prot
Match: CAH2_ARATH (Carbonic anhydrase 2 OS=Arabidopsis thaliana GN=CA2 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.033e-28
Identity = 61/79 (77.22%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    1 IEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLNNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDF 237
            IEDWVKI +PAKSKVL E     F DQC  CE+EAVNVSL NLLTYPFVREG+V  TLALKGGYYDFVNGSFELW L F
Sbjct:  173 IEDWVKICLPAKSKVLAESESSAFEDQCGRCEREAVNVSLANLLTYPFVREGVVKGTLALKGGYYDFVNGSFELWELQF 251          
BLAST of CX300146 vs. ExPASy Swiss-Prot
Match: CAH2_FLALI (Carbonic anhydrase 2 (Fragment) OS=Flaveria linearis PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.669e-27
Identity = 55/79 (69.62%), Postives = 63/79 (79.75%), Query Frame = 1
Query:    1 IEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLNNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDF 237
            IE WVK+G+PAKSKV     +  F D CT CEKEAVNVSL NLLTYPFVR+ LVNK L+LKG +YDFVNG+F+LW LDF
Sbjct:  104 IEQWVKLGLPAKSKVKANCNNLEFADLCTKCEKEAVNVSLGNLLTYPFVRDALVNKKLSLKGAHYDFVNGAFDLWNLDF 182          
The following BLAST results are available for this feature:
BLAST of CX300146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CAHC_PEA4.788e-3481.01Carbonic anhydrase, chloroplastic OS=Pisum sativum... [more]
CAHC_TOBAC2.376e-3383.54Carbonic anhydrase, chloroplastic OS=Nicotiana tab... [more]
CAHC_SPIOL6.913e-3379.75Carbonic anhydrase, chloroplastic OS=Spinacia oler... [more]
CAHC_ARATH1.883e-3078.48Carbonic anhydrase, chloroplastic OS=Arabidopsis t... [more]
CAHX_FLABI3.211e-3075.95Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2[more]
CAHX_FLAPR1.220e-2974.68Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1[more]
CAHX_FLABR1.220e-2974.68Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1[more]
CAH1_FLALI1.220e-2974.68Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=... [more]
CAH2_ARATH1.033e-2877.22Carbonic anhydrase 2 OS=Arabidopsis thaliana GN=CA... [more]
CAH2_FLALI5.669e-2769.62Carbonic anhydrase 2 (Fragment) OS=Flaveria linear... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07006G02SK SaltLeaf1 Citrus clementina cDNA clone C07006G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300146 ID=CX300146; Name=CX300146; organism=Citrus clementina; type=EST; length=419bp
ATTGAAGACTGGGTGAAAATTGGCATCCCTGCCAAGTCTAAGGTGTTAAC
AGAGCATGGTGACAAGCCTTTTGGAGACCAATGCACATACTGTGAAAAGG
AGGCGGTGAATGTGTCCCTCAATAATCTGCTAACGTATCCATTTGTGAGA
GAAGGCTTGGTGAACAAAACTCTGGCACTCAAGGGTGGTTACTATGATTT
CGTTAATGGATCATTCGAGCTCTGGGGTCTGGACTTTAGCCTTTCTCCTC
CACTCTCCGTATGAACATCAACCGATATATGATATCAGAGACCTCATCTT
TGTTCTCTTTATTACCATGTGATCTACTTTTATCTCCCTTTCTTCCCATG
TGTACTCTTGTATGGTGTATTGAGCTGCAATTTACAATAGACTTACGATG
AAGAAAAAAAAAAAAAAAA
back to top