CX300147

Overview
NameCX300147
Unique NameCX300147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11254 contig Ccv1_Contig11254:638..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 8.550e-48
Identity = 92/114 (80.70%), Postives = 105/114 (92.11%), Query Frame = 3
Query:    3 HLIVREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 344
            HLI++EDD+VGILET++IKDLKPLNDRVFIKVAEAEE TAGGLLLTE +KEKPSIGTVIAVGPG LDEEG   PL ++ G+TV+YSKYAGNDFKG DG+NYIALRAS+VMA+LS
Sbjct:  140 HLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNYIALRASDVMAILS 253          

HSP 2 Score: 70.8626 bits (172), Expect = 3.394e-12
Identity = 40/112 (35.71%), Postives = 66/112 (58.93%), Query Frame = 3
Query:    6 LIVREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            L+V+   VV    T     +KPL DRV +K+ EAEE T GG+LL   ++ KP  G V+AVG G    + N+  +++  G  ++YSKYAG + + +D   ++ L+  +++ +L
Sbjct:   47 LVVKAASVVAPKYTS----IKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGK-NKIDITVPTGAQIIYSKYAGTEVEFND-VKHLILKEDDIVGIL 152          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.509e-44
Identity = 84/114 (73.68%), Postives = 99/114 (86.84%), Query Frame = 3
Query:    3 HLIVREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 344
            HLIV+EDD++GILETD++KDLKPLNDR+ IKVAE E  T+GGLLL E+SKEKPS GTV+A GPG LDEEGNR PL +  GNTV+YSKYAGNDFKG DG++Y+ LR S+VMAVLS
Sbjct:  142 HLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENKTSGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGVDGSDYMVLRVSDVMAVLS 255          

HSP 2 Score: 69.3218 bits (168), Expect = 9.874e-12
Identity = 35/102 (34.31%), Postives = 63/102 (61.76%), Query Frame = 3
Query:   39 LETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRK-PLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            + T +   +KPL DRV IK    EE T  G+ L  A+++KP  G V+A+G G   + G++K P+++  G  V+YSKY G + +  DG++++ ++  +++ +L
Sbjct:   56 ITTSKYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSG--KKVGDKKLPVAVKTGAEVVYSKYTGTEIE-VDGSSHLIVKEDDIIGIL 154          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_THEVL (10 kDa chaperonin OS=Thermosynechococcus vulcanus GN=groS PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 6.170e-22
Identity = 46/96 (47.92%), Postives = 71/96 (73.96%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            +  +KPL DR+F+KVAE+EE TAGG+LL + ++EKP +G V AVGPG L E+G R+P+ +  G+ V+YSKYAG + K + G +Y+ L   +++A++
Sbjct:    8 VSTVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLA-GEDYVLLSEKDILAIV 102          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_THEEB (10 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groS PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 6.170e-22
Identity = 46/96 (47.92%), Postives = 71/96 (73.96%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 341
            +  +KPL DR+F+KVAE+EE TAGG+LL + ++EKP +G V AVGPG L E+G R+P+ +  G+ V+YSKYAG + K + G +Y+ L   +++A++
Sbjct:    8 VSTVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLA-GEDYVLLSEKDILAIV 102          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_PROM5 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9515) GN=groS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.795e-21
Identity = 47/97 (48.45%), Postives = 71/97 (73.20%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 344
            +  +KPL DR+FIKV+E+EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+S
Sbjct:    8 VSTVKPLGDRIFIKVSESEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVVS 103          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_SYNPW (10 kDa chaperonin OS=Synechococcus sp. (strain WH7803) GN=groS PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.345e-21
Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 344
            +  +KPL DRVF+KV+E+EE TAGG+LL + +KEKP +G V+ VGPG  +E+G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV++
Sbjct:    8 VSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKANEDGSRQAPEVGVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_SYNP2 (10 kDa chaperonin OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=groS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.062e-21
Identity = 47/97 (48.45%), Postives = 71/97 (73.20%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 344
            +  LKPL DRVF+KV+E+EE TAGG+LL +++KEKP IG V+AVG G  +++G+R  + +  G+ V+YSKYAG D K S G +Y+ L   +++A ++
Sbjct:    8 VSTLKPLGDRVFVKVSESEEKTAGGILLPDSAKEKPQIGEVVAVGEGKRNDDGSRSAVDVKVGDKVLYSKYAGTDIKLS-GDDYVLLSEKDILATVA 103          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_MICAN (10 kDa chaperonin OS=Microcystis aeruginosa (strain NIES-843) GN=groS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.062e-21
Identity = 46/97 (47.42%), Postives = 69/97 (71.13%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 344
            +  +KPL DRVF+KV+ +EE TAGG+ L +A+KEKP IG V+AVGPG  +++G+R P+ +  G+ V+YSKYAG D K   G  ++ L   +++A +S
Sbjct:    8 VTTVKPLGDRVFVKVSPSEEKTAGGIFLPDAAKEKPQIGEVVAVGPGKRNDDGSRTPVEVGVGDKVLYSKYAGTDIK-LGGEEFVLLSEKDILAAVS 103          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_CYAP7 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 7424) GN=groS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.062e-21
Identity = 45/94 (47.87%), Postives = 68/94 (72.34%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMA 335
            +  +KPL DRVF+KV+ +EE TAGG+LL + +KEKP +G V+AVGPG  +++G+R P+ +  G+ V+YSKYAG D K   G +Y+ L   +++A
Sbjct:    8 VSTVKPLGDRVFVKVSPSEEKTAGGILLPDTAKEKPQLGEVVAVGPGKRNDDGSRSPIEVKVGDKVLYSKYAGTDIK-LGGEDYVLLSEKDILA 100          
BLAST of CX300147 vs. ExPASy Swiss-Prot
Match: CH10_PROMS (10 kDa chaperonin OS=Prochlorococcus marinus (strain AS9601) GN=groS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.999e-21
Identity = 47/97 (48.45%), Postives = 70/97 (72.16%), Query Frame = 3
Query:   54 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 344
            +  +KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+E+G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+S
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNEDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVVS 103          
The following BLAST results are available for this feature:
BLAST of CX300147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10C_ARATH8.550e-4880.7020 kDa chaperonin, chloroplastic OS=Arabidopsis th... [more]
CH10C_SPIOL1.509e-4473.6820 kDa chaperonin, chloroplastic OS=Spinacia olera... [more]
CH10_THEVL6.170e-2247.9210 kDa chaperonin OS=Thermosynechococcus vulcanus ... [more]
CH10_THEEB6.170e-2247.9210 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH10_PROM51.795e-2148.4510 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_SYNPW2.345e-2148.9810 kDa chaperonin OS=Synechococcus sp. (strain WH7... [more]
CH10_SYNP23.062e-2148.4510 kDa chaperonin OS=Synechococcus sp. (strain ATC... [more]
CH10_MICAN3.062e-2147.4210 kDa chaperonin OS=Microcystis aeruginosa (strai... [more]
CH10_CYAP73.062e-2147.8710 kDa chaperonin OS=Cyanothece sp. (strain PCC 74... [more]
CH10_PROMS3.999e-2148.4510 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]

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Properties
Property NameValue
Genbank descriptionC07006G03SK SaltLeaf1 Citrus clementina cDNA clone C07006G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300147 ID=CX300147; Name=CX300147; organism=Citrus clementina; type=EST; length=479bp
ATCATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGAT
GAAATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGC
TGAGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCA
AGGAGAAACCTTCCATTGGAACGGTCATTGCTGTTGGACCCGGTCCTCTA
GATGAGGAAGGTAATAGGAAACCTCTATCCATTGCACCAGGGAACACGGT
GATGTATTCGAAGTATGCAGGGAATGACTTCAAGGGCAGTGATGGCACCA
ACTACATTGCTTTAAGAGCTTCTGAAGTGATGGCTGTGCTCTCTTAGTTG
TCTGTGTTTACTTGAGCGAGGCTTTATATGTATTAGTGAATTGAATTTTA
TGGTTGAGTTGCCTCAAGGCATACGGATTTTGACTGTAATCTTATTTGAA
CATAAAGAATTGCAGCTTGATCAATCGAA
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