CX300157

Overview
NameCX300157
Unique NameCX300157
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length391
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300157_ssr1 microsatellite CX300157_ssr1:1..12. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1039 contig Ccv1_Contig1039:142..532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300157 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.099e-17
Identity = 46/94 (48.94%), Postives = 55/94 (58.51%), Query Frame = 3
Query:   30 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPATGVYRPENLANELDGADLRAMFL 311
            MARSF+N K+ SA VADG SN   + G++AA+                M+ K  EE     EKVSWVPDP TG YRPEN  NE+D AD+RA  L
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93          
BLAST of CX300157 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.365e-12
Identity = 44/96 (45.83%), Postives = 54/96 (56.25%), Query Frame = 3
Query:   30 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSEKVSWVPDPATGVYRPENLANELDGADLRAMFLKH 317
            MARS   AKL  A VADGIS +I +RGY+AA+                 L+    E +G+S   +W PDP TG YRPEN A E+D A+LR M L H
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKND--LRPAVREDSGASS--AWAPDPITGYYRPENRAVEIDPAELREMLLNH 92          
BLAST of CX300157 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.845e-12
Identity = 39/100 (39.00%), Postives = 52/100 (52.00%), Query Frame = 3
Query:   30 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSE----KVSWVPDPATGVYRPENLANELDGADLRAMFLKH 317
            MARS S+ KL  A + DG+  +I +RGYS A                 + ++ A + + SSE      +W PDP TG YRPEN   E+D A+LR M L H
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNH 100          
BLAST of CX300157 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 39/100 (39.00%), Postives = 50/100 (50.00%), Query Frame = 3
Query:   30 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAEEMTGSSE----KVSWVPDPATGVYRPENLANELDGADLRAMFLKH 317
            MARS S+ K   A V D +  +I +RGYS A                 + ++ A + + SSE      +W PDP TG YRPEN   E+D ADLR M L H
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNH 100          
The following BLAST results are available for this feature:
BLAST of CX300157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ARG2_PHAAU4.099e-1748.94Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
LEA5_CITSI1.365e-1245.83Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI8.845e-1239.00Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI5.733e-1139.00Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionC07006H04SK SaltLeaf1 Citrus clementina cDNA clone C07006H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300157 ID=CX300157; Name=CX300157; organism=Citrus clementina; type=EST; length=391bp
ATCATCATCATCCCACATAACTAAGAAAAATGGCTCGCTCTTTCTCAAAC
GCTAAGCTTTTCTCTGCTTTCGTCGCTGACGGAATCTCTAACGCCATCTA
CAAAAGAGGATACTCGGCGGCATCACAAGGCGCTGTGTCGCGGGCAACAG
GGGGAGCTAGGAGTGCTGCTGCGATGTTGAAGAAACCAGCTGAAGAGATG
ACAGGATCCAGTGAGAAGGTCTCGTGGGTCCCAGACCCAGCCACTGGTGT
CTACAGGCCGGAGAATCTCGCCAACGAGCTCGATGGGGCCGACCTCAGAG
CCATGTTCTTGAAGCACAACAACTGATCATCAAAATTAATAAGCATTATT
ATTAATATATATTAATTCGGACATGGAAACTGAGGAAGGAC
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