CX300158

Overview
NameCX300158
Unique NameCX300158
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14139 contig Ccv1_Contig14139:868..1390. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300158 vs. ExPASy Swiss-Prot
Match: UGDH_SOYBN (UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 6.034e-96
Identity = 163/173 (94.22%), Postives = 171/173 (98.84%), Query Frame = 3
Query:    3 VGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQ 521
            VGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIA+LGFAFKKDTGDTRETPAIDVC+GLLGDKA LSIYDPQVTEDQIQRDL+MNKFDWDHP+HLQP SPTTVK+VSVVWDAYEATKDAHG+CILTEWDEFKTLDYQ+I+DNMQ
Sbjct:  266 VGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANLSIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGLCILTEWDEFKTLDYQKIFDNMQ 438          
BLAST of CX300158 vs. ExPASy Swiss-Prot
Match: UGDH1_ARATH (Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 6.672e-95
Identity = 161/173 (93.06%), Postives = 170/173 (98.27%), Query Frame = 3
Query:    3 VGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQ 521
            VGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVV+SMFN+VSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLL DKARLSIYDPQVTEDQIQRDL+MNKFDWDHPLHLQPMSPTTVKQV+V WDAYEATKDAHG+CI+TEWDEFK LD+Q+I+DNMQ
Sbjct:  266 VGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVSSMFNSVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLEDKARLSIYDPQVTEDQIQRDLSMNKFDWDHPLHLQPMSPTTVKQVTVTWDAYEATKDAHGICIMTEWDEFKNLDFQKIFDNMQ 438          
BLAST of CX300158 vs. ExPASy Swiss-Prot
Match: UGDH2_ARATH (Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 7.376e-94
Identity = 156/173 (90.17%), Postives = 170/173 (98.27%), Query Frame = 3
Query:    3 VGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQ 521
            VGFGGSCFQKDILNLVYIC+CNGLPEVAEYWKQVIKINDYQK+RFVNR+V+SMFNTVSNKK+A+LGFAFKKDTGDTRETPAIDVCKGLLGDKA++SIYDPQVTE+QIQRDL+M KFDWDHPLHLQPMSPTTVKQVSV WDAYEATKDAH VC+LTEWDEFK+LDYQ+I+DNMQ
Sbjct:  266 VGFGGSCFQKDILNLVYICQCNGLPEVAEYWKQVIKINDYQKNRFVNRIVSSMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKGLLGDKAQISIYDPQVTEEQIQRDLSMKKFDWDHPLHLQPMSPTTVKQVSVTWDAYEATKDAHAVCVLTEWDEFKSLDYQKIFDNMQ 438          
BLAST of CX300158 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.233e-48
Identity = 100/173 (57.80%), Postives = 124/173 (71.68%), Query Frame = 3
Query:    3 VGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQ-VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNM 518
            VGFGGSCFQKDILNL+YICE   LPEVA YW+QVI +N+YQK RF  +++ S+FNTVS+K+IA+LGFAFKK+TGDTRET AI VC+ LL + A L IYDP+V  +QI  DLT       HP   +  SP  VK+ V +  D Y A +  H + I TEWDEF  LD++RIY +M
Sbjct:  266 VGFGGSCFQKDILNLIYICENLNLPEVAAYWQQVIDMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTRETAAITVCQTLLEEGAALDIYDPKVEPEQIIDDLT-------HPSVTE--SPEKVKKAVQIHSDPYSAVRATHALVICTEWDEFVDLDFKRIYQSM 429          
BLAST of CX300158 vs. ExPASy Swiss-Prot
Match: UGDH_CHICK (UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.363e-47
Identity = 93/172 (54.07%), Postives = 123/172 (71.51%), Query Frame = 3
Query:    3 VGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNM 518
            VGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A+L IYDP+V ++QI  DL+      D+ +          + V++  D YEA   AH + I TEWD FK LDY+RI+  M
Sbjct:  270 VGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAKLHIYDPKVPKEQIILDLSHPGVSEDNQVS---------RLVTISQDPYEACDGAHALVICTEWDMFKELDYERIHKKM 432          
BLAST of CX300158 vs. ExPASy Swiss-Prot
Match: UGDH_BOVIN (UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 2.325e-47
Identity = 94/172 (54.65%), Postives = 120/172 (69.77%), Query Frame = 3
Query:    3 VGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNM 518
            VGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH V I TEWD FK LDY+RI+  M
Sbjct:  270 VGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSKDDQV---------ARLVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKM 432          
BLAST of CX300158 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.037e-47
Identity = 94/172 (54.65%), Postives = 120/172 (69.77%), Query Frame = 3
Query:    3 VGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNM 518
            VGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH V I TEWD FK LDY+RI+  M
Sbjct:  270 VGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKM 432          
BLAST of CX300158 vs. ExPASy Swiss-Prot
Match: UGDH_HUMAN (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.037e-47
Identity = 94/172 (54.65%), Postives = 120/172 (69.77%), Query Frame = 3
Query:    3 VGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNM 518
            VGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH V I TEWD FK LDY+RI+  M
Sbjct:  270 VGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKM 432          
BLAST of CX300158 vs. ExPASy Swiss-Prot
Match: UGDH_MOUSE (UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 6.765e-47
Identity = 93/172 (54.07%), Postives = 120/172 (69.77%), Query Frame = 3
Query:    3 VGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNM 518
            VGFGGSCFQKD+LNLVY+CE   LPEVA YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH + I TEWD FK LDY+RI+  M
Sbjct:  270 VGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSADDQVS---------RLVTISKDPYEACDGAHALVICTEWDMFKELDYERIHKKM 432          
BLAST of CX300158 vs. ExPASy Swiss-Prot
Match: UGDH_RAT (UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.968e-46
Identity = 92/172 (53.49%), Postives = 119/172 (69.19%), Query Frame = 3
Query:    3 VGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNM 518
            VGFGG CFQKD+LNLVY+CE   LPEVA YW+QVI +NDYQ+ RF +R++ S+FNTV++KKIA+LGFAFKKDTGDTRE+ +I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH + I TEWD FK LDY+RI+  M
Sbjct:  270 VGFGGGCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSADDQVS---------RLVTISKDPYEACDGAHALVICTEWDMFKELDYERIHKRM 432          
The following BLAST results are available for this feature:
BLAST of CX300158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
UGDH_SOYBN6.034e-9694.22UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV... [more]
UGDH1_ARATH6.672e-9593.06Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidop... [more]
UGDH2_ARATH7.376e-9490.17Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidop... [more]
UGDH_DROME1.233e-4857.80UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]
UGDH_CHICK1.363e-4754.07UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UG... [more]
UGDH_BOVIN2.325e-4754.65UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH ... [more]
UGDH_PONAB3.037e-4754.65UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]
UGDH_HUMAN3.037e-4754.65UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGD... [more]
UGDH_MOUSE6.765e-4754.07UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugd... [more]
UGDH_RAT1.968e-4653.49UDP-glucose 6-dehydrogenase OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionC07006H06SK SaltLeaf1 Citrus clementina cDNA clone C07006H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300158 ID=CX300158; Name=CX300158; organism=Citrus clementina; type=EST; length=523bp
GTGTTGGGTTCGGTGGCTCCTGCTTCCAGAAGGATATTTTGAATCTGGTT
TACATCTGCGAGTGCAATGGCCTTCCAGAGGTGGCTGAGTACTGGAAACA
AGTCATTAAGATCAATGATTACCAGAAAAGCCGTTTTGTGAACCGCGTAG
TTGCCTCTATGTTCAACACGGTTTCAAACAAGAAGATTGCCGTTCTGGGA
TTTGCCTTCAAGAAGGATACCGGTGACACCAGAGAGACCCCAGCCATTGA
TGTCTGCAAGGGGCTTTTGGGAGACAAAGCTCGGTTGAGCATATACGACC
CACAGGTCACCGAGGACCAGATCCAGAGGGACCTTACAATGAACAAGTTT
GACTGGGACCATCCTCTTCACCTCCAGCCAATGAGTCCCACCACGGTGAA
GCAAGTGAGCGTGGTCTGGGATGCCTATGAAGCAACAAAAGATGCCCATG
GTGTCTGCATCTTGACCGAGTGGGATGAGTTCAAGACTCTTGACTATCAG
AGGATATATGACAACATGCAGAA
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