CX300163

Overview
NameCX300163
Unique NameCX300163
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.510e-38
Identity = 80/137 (58.39%), Postives = 98/137 (71.53%), Query Frame = 1
Query:    1 KKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLDYSPATISA 402
            K R++ A LV+RAER GFKA+ LT DTPRLGRREADIKN+ + PP   LKN EG+   K+     S   +     +D SLSWKD+ WL++IT+LPIL+KG++T EDA  A +   AGIIVSNHGARQLDY PATI A
Sbjct:  132 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMA 268          
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.051e-37
Identity = 80/137 (58.39%), Postives = 97/137 (70.80%), Query Frame = 1
Query:    1 KKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLDYSPATISA 402
            K R++   LV+RAER GFKA+ LT DTPRLGRRE+DIKN+   PP   LKN EGL   K+     S   +     +D +LSWKD++WL++IT LPIL+KG+LT EDA  A +   AGIIVSNHGARQLDY PATISA
Sbjct:  132 KNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISA 268          
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 8.051e-37
Identity = 79/137 (57.66%), Postives = 97/137 (70.80%), Query Frame = 1
Query:    1 KKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLDYSPATISA 402
            K R +   LV+RAE+ GFKA+ LT DTPRLGRRE+DIKN+   PP   LKN EGL   K+     S   +     +D +LSWKD++WL++ITN+PIL+KG+LT EDA  A +   AGIIVSNHGARQLDY PATISA
Sbjct:  132 KNRKVVEQLVRRAEKAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDIQWLQTITNMPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISA 268          
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.683e-26
Identity = 60/138 (43.48%), Postives = 90/138 (65.22%), Query Frame = 1
Query:    1 KKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADAN------ETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLDYSPATI 396
            K R++T  LV++AE+ G+KA+ +T DTP LG R  D++N+   PP   ++   ++ +S     NF  D+       + +D S+SW+D++WLR +T+LPI+ KGIL  +DA +A +    GI+VSNHGARQLD  PATI
Sbjct:  135 KDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATI 272          
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.896e-26
Identity = 59/138 (42.75%), Postives = 88/138 (63.77%), Query Frame = 1
Query:    1 KKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADAN------ETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLDYSPATI 396
            K R+I+  +V+RAE+ G+KA+ +T DTP LG R  D++N+   PP   ++   +  ++     NF  ++       + +D SLSW D+ WLR +T+LPI++KGIL  +DA +A +    GI+VSNHGARQLD  PATI
Sbjct:  135 KDREISRQIVKRAEKQGYKAIFVTVDTPYLGNRIDDVRNRFKLPPQLRMKNFETNDLAFSPKGNFGDNSGLAEYVAQAIDPSLSWDDITWLRRLTSLPIVVKGILRGDDAKEAVKHGVDGILVSNHGARQLDGVPATI 272          
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.206e-24
Identity = 67/139 (48.20%), Postives = 84/139 (60.43%), Query Frame = 1
Query:    1 KKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITP---PLKNLEGLLSTKVSSDTGSNFEADANE----TMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLDYSPATI 396
            K R ++  LV+RAE  G+ ALVLT DTP LG+R AD KN    P    LK  E L+         SN +   N+     +D SL+W DL+WL+SIT LPIL+KGI+  +DA  A +    GIIVSNHG RQLD  P+TI
Sbjct:  161 KDRKVSEELVKRAESIGYSALVLTVDTPFLGKRTADFKNSFKLPNGLSLKIFEKLML--------SNLDGGLNQYIATMIDPSLTWNDLKWLKSITKLPILVKGIMCPKDAELALQYGADGIIVSNHGGRQLDTCPSTI 291          
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.741e-23
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    7 RDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLDYSPATISA 402
            R I   ++Q+ E  GFKALV+T D P++G R  DI N++    +K L  LL    S + G+         +D S+ W+DL W +S+T LPI++KGILT+EDA  A +    GIIVSNHG RQLD  PA+I A
Sbjct:  135 RQINKQMIQKVESLGFKALVITVDVPKVGNRRNDITNQVDL--MKKL--LLKDLGSPEMGNVMPYFQMSPIDPSICWEDLSWFQSMTRLPIILKGILTKEDAELAVKHNVHGIIVSNHGGRQLDEVPASIDA 262          
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.315e-22
Identity = 62/134 (46.27%), Postives = 77/134 (57.46%), Query Frame = 1
Query:   10 DITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLDYSPATISA 402
            D    +VQRAE  GFKALV+T DTP LG R  D +N++       LK+L  L   K +     +F         AS  W DL  L+SIT LPI++KGILT+EDA  A +    GI+VSNHG RQLD   A+I A
Sbjct:  136 DFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFPK-------ASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDA 262          
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: HAOX2_HUMAN (Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.248e-21
Identity = 60/126 (47.62%), Postives = 75/126 (59.52%), Query Frame = 1
Query:   25 LVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLDYSPATISA 402
            L+QR E  GFKALV+T DTP  G R  DI+N++     +NL   L+   S   G+         +  SL W DL W +SIT LPI++KGILT+EDA  A +    GIIVSNHG RQLD   A+I A
Sbjct:  141 LIQRVESLGFKALVITLDTPVCGNRRHDIRNQL----RRNLT--LTDLQSPKKGNAIPYFQMTPISTSLCWNDLSWFQSITRLPIILKGILTKEDAELAVKHNVQGIIVSNHGGRQLDEVLASIDA 260          
BLAST of CX300163 vs. ExPASy Swiss-Prot
Match: CYB2_YEAST (Cytochrome b2, mitochondrial OS=Saccharomyces cerevisiae GN=CYB2 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.742e-21
Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    7 RDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPPLKNLEGLLSTKVSSDTGSNFEADANETMDASLSWKDLEWLRSITNLPILIKGILTREDAIKAAERREAGIIVSNHGARQLDYSPATI 396
            R IT  LV+  E+ G KAL +T D P LG+RE D+K K         + +  T V    G++     ++ +D SL+WKD+E L+  T LPI+IKG+   ED IKAAE   +G+++SNHG RQLD+S A I
Sbjct:  339 RKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKA-GPKAMKKTNVEESQGAS--RALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPI 465          
The following BLAST results are available for this feature:
BLAST of CX300163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
GOX_SPIOL9.510e-3858.39Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
GOX2_ARATH8.051e-3758.39Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX1_ARATH8.051e-3757.66Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
HAOX1_HUMAN1.683e-2643.48Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX1_MOUSE4.896e-2642.75Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
HAOX_DICDI1.206e-2448.20Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]
HAOX2_BOVIN1.741e-2345.45Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
HAOX2_RAT7.315e-2246.27Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]
HAOX2_HUMAN1.248e-2147.62Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2... [more]
CYB2_YEAST4.742e-2143.85Cytochrome b2, mitochondrial OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionC07007A02SK SaltLeaf1 Citrus clementina cDNA clone C07007A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300163 ID=CX300163; Name=CX300163; organism=Citrus clementina; type=EST; length=403bp
AAGAAACGAGATATAACAGCTACTCTAGTGCAGAGAGCTGAAAGGAATGG
TTTTAAGGCTCTTGTCCTAACTGCTGATACTCCAAGACTTGGTAGAAGGG
AGGCAGATATAAAGAACAAAATGATTACACCGCCGTTGAAGAATTTGGAA
GGCCTCTTATCAACCAAAGTCAGCTCTGATACAGGTTCAAATTTTGAAGC
TGATGCCAATGAGACCATGGATGCTTCTTTAAGTTGGAAGGATTTAGAAT
GGCTAAGATCTATTACAAACTTACCAATTTTGATCAAGGGGATACTTACT
CGTGAAGATGCAATAAAAGCTGCGGAAAGACGTGAAGCTGGGATTATTGT
CTCCAATCACGGAGCTCGACAGTTAGATTATAGTCCTGCCACTATTTCTG
CTC
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