CX300165

Overview
NameCX300165
Unique NameCX300165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length318
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig696 contig Ccv1_Contig696:416..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300165 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.131e-26
Identity = 60/84 (71.43%), Postives = 70/84 (83.33%), Query Frame = 1
Query:    1 ALGVEISKGQDVFAQLSDGGVAWFLETSVLLTVASLVPLFKGVSVESKSDGFMTSDADLGNGRFAMLGLVAFAFTEFVKGGTLV 252
            A+GVEI+KGQ +  QLS GGVAWFL TSVLL++ASL+P F+GVSVESKS   M+SDA+  NGR AMLGLVA AFTEFVKG +LV
Sbjct:  113 AMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CX300165 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.995e-24
Identity = 49/84 (58.33%), Postives = 72/84 (85.71%), Query Frame = 1
Query:    1 ALGVEISKGQDVFAQLSDGGVAWFLETSVLLTVASLVPLFKGVSVESKSDGFMTSDADLGNGRFAMLGLVAFAFTEFVKGGTLV 252
            A+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDA++ NGRFAM+GLVA AFTE+VKGG L+
Sbjct:  114 AVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CX300165 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.028e-17
Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 ALGVEISKGQDVFAQLS--DGGVAWFLETSVLLTVASLVPLFKGVSVESKSDGFMTSDADLGNGRFAMLGLVAFAFTEFVKGGTLV 252
            AL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DA+L NGRFAMLGLVA A TEF+ G   V
Sbjct:  144 ALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CX300165 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.431e-15
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 ALGVEISKGQDVFAQLSDG-GVAWFLETSVLLTVASLVPLFKGVSVESKSDGFMTSDADLGNGRFAMLGLVAFAFTEFVKGGTLV 252
            AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++A+L NGRFAMLGLVA A TE + G   +
Sbjct:   86 ALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CX300165 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.433e-14
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 ALGVEISKGQDVFAQLSDG-GVAWFLETSVLLTVASLVPLFKGVSVESKSDGFMTSDADLGNGRFAMLGLVAFAFTEFVKG 240
            AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++A+L NGRFAM+GLVA A TE + G
Sbjct:   81 ALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
The following BLAST results are available for this feature:
BLAST of CX300165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ELI_PEA2.131e-2671.43Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL1.995e-2458.33Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU4.028e-1753.49High molecular mass early light-inducible protein ... [more]
ELI9_HORVU6.431e-1548.24Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU1.433e-1449.38Low molecular mass early light-inducible protein H... [more]
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Properties
Property NameValue
Genbank descriptionC07007A05SK SaltLeaf1 Citrus clementina cDNA clone C07007A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300165 ID=CX300165; Name=CX300165; organism=Citrus clementina; type=EST; length=318bp
GCATTGGGGGTGGAGATATCCAAGGGTCAGGATGTGTTTGCCCAGTTATC
AGACGGTGGGGTTGCCTGGTTCTTGGAGACCAGTGTTTTGCTCACGGTTG
CGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGAT
GGGTTCATGACTTCGGATGCTGATTTGGGGAATGGGAGGTTTGCTATGCT
GGGCCTTGTTGCTTTTGCTTTCACCGAGTTTGTTAAGGGTGGCACCCTTG
TTTACGCTTATTTTTGTTTAGATCTGTAGATCTGTATTTTTTTTAACTAA
TTAATGTATGAGATCCTA
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