CX300168

Overview
NameCX300168
Unique NameCX300168
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length267
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300168 vs. ExPASy Swiss-Prot
Match: EIF3C_ARATH (Eukaryotic translation initiation factor 3 subunit C OS=Arabidopsis thaliana GN=TIF3C1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.907e-20
Identity = 57/90 (63.33%), Postives = 60/90 (66.67%), Query Frame = 2
Query:    2 EKLSILAESNERAMESRTGGG-LDLSLRRRDN-QDYATETGAMGGKWQDNLSYNQGRQGRSAFTGGGGRSLALGQAGGYSRGQLQRSGGY 265
            EKLSILAESNERAMESRTGGG LDLS RRRDN QDYA      GG WQD  +Y QGRQG  +  GGG  S   GQ  G +RG     GGY
Sbjct:  788 EKLSILAESNERAMESRTGGGGLDLSSRRRDNNQDYAGAASGGGGYWQDKANYGQGRQGNRSGYGGGRSSGQNGQWSGQNRG-----GGY 872          
BLAST of CX300168 vs. ExPASy Swiss-Prot
Match: EIF3C_MEDTR (Eukaryotic translation initiation factor 3 subunit C OS=Medicago truncatula GN=TIF3C1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.421e-19
Identity = 57/98 (58.16%), Postives = 64/98 (65.31%), Query Frame = 2
Query:    2 EKLSILAESNERAMESRT-GGGLDLSLRRRDNQDYATETG------AMGGKWQDNLSYNQGRQGRSAFTGGGGRSLALGQA---GGYSRGQLQRSGGY 265
            EKLSILAESNERA E+R  GGGLDL  RRRD QDYA          + GG+WQD LSY+Q RQG      GGGR+L+  QA   GGYSRG+    GGY
Sbjct:  808 EKLSILAESNERATEARLGGGGLDLPPRRRDGQDYAAAAAGGGSGTSSGGRWQD-LSYSQTRQGSGRTGYGGGRALSFSQAGGSGGYSRGRGTGGGGY 904          
The following BLAST results are available for this feature:
BLAST of CX300168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EIF3C_ARATH8.907e-2063.33Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_MEDTR4.421e-1958.16Eukaryotic translation initiation factor 3 subunit... [more]
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Properties
Property NameValue
Genbank descriptionC07007A08SK SaltLeaf1 Citrus clementina cDNA clone C07007A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300168 ID=CX300168; Name=CX300168; organism=Citrus clementina; type=EST; length=267bp
AGAGAAGCTGTCCATCCTCGCTGAAAGTAATGAAAGAGCAATGGAGTCAA
GGACTGGTGGTGGATTGGACCTGTCTCTTAGGCGGAGAGATAATCAAGAC
TATGCAACTGAGACAGGTGCTATGGGTGGCAAGTGGCAAGACAACTTATC
CTACAATCAGGGAAGGCAAGGCCGATCGGCTTTTACTGGGGGTGGTGGAA
GGTCATTGGCACTAGGCCAAGCCGGAGGTTATTCTAGGGGCCAACTACAA
AGATCTGGGGGATATTC
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