CX300169

Overview
NameCX300169
Unique NameCX300169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length367
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB1_THEEB (Chaperone protein clpB 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.415e-48
Identity = 94/119 (78.99%), Postives = 104/119 (87.39%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTEL+KALA +MF TEEALVRIDMSEYMEKHA+ RLIGAPPGYVGY+E GQLTE +RRRPY V+L DEI+KAH DVFNV L  LDDGRVTDSQG T  F NT+IIMTSN+GSQYILD+
Sbjct:  615 GKTELAKALAAFMFDTEEALVRIDMSEYMEKHAVSRLIGAPPGYVGYDEGGQLTEAIRRRPYAVVLFDEIEKAHPDVFNVFLQILDDGRVTDSQGRTVDFKNTIIIMTSNIGSQYILDV 733          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB2_ANASP (Chaperone protein clpB 2 OS=Anabaena sp. (strain PCC 7120) GN=clpB2 PE=3 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 5.825e-48
Identity = 94/119 (78.99%), Postives = 104/119 (87.39%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTEL+KALA YMF TE+ALVRIDMSEYMEKHA+ RLIGAPPGYVGYEE GQLTE +RRRPY VIL DEI+KAH DVFN+ L  LDDGRVTD+QG T  F NT+IIMTSN+GSQYILD+
Sbjct:  616 GKTELAKALASYMFDTEDALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTETIRRRPYAVILFDEIEKAHPDVFNIFLQILDDGRVTDAQGHTVDFKNTIIIMTSNIGSQYILDI 734          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_PLEBO (Chaperone protein clpB OS=Plectonema boryanum GN=clpB PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 6.440e-47
Identity = 92/118 (77.97%), Postives = 103/118 (87.29%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTEL+KALA ++F TEEA+VRIDMSEYMEKH++ RLIGAPPGYVGYEE GQLTE VRRRPY VIL DEI+KAH DVFNV+L  LDDGRVTDSQG T  F NT+IIMTSN+GSQYI +
Sbjct:  617 GKTELAKALAAFLFDTEEAMVRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNVMLQILDDGRVTDSQGRTVDFKNTIIIMTSNIGSQYIFE 734          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNE7 (Chaperone protein clpB 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB1 PE=2 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 6.440e-47
Identity = 90/119 (75.63%), Postives = 105/119 (88.24%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTEL+KALA Y+F TE+A++RIDMSEYMEKHA+ RLIGAPPGYVGY+E GQLTE VRRRPY VIL DEI+KAH DVFNV+L  LDDGRVTDS+G T  F NT++I+TSN+GSQYILD+
Sbjct:  616 GKTELAKALAAYLFDTEDAMIRIDMSEYMEKHAVSRLIGAPPGYVGYDEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNVMLQILDDGRVTDSRGRTVDFKNTILILTSNIGSQYILDV 734          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNY3 (Chaperone protein clpB 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.120e-46
Identity = 91/119 (76.47%), Postives = 103/119 (86.55%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTEL+KALA  +F TEEALVRIDMSEYMEKHA+ RL+GAPPGYVGYEE GQLTE +RRRPY VIL DEI+KAH DVFNV+L  LDDGR+TD+QG    F NT+IIMTSN+GSQYILD+
Sbjct:  616 GKTELAKALAKNLFDTEEALVRIDMSEYMEKHAVSRLMGAPPGYVGYEEGGQLTEAIRRRPYSVILFDEIEKAHGDVFNVMLQILDDGRLTDAQGHVVDFKNTIIIMTSNLGSQYILDV 734          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_PROMM (Chaperone protein clpB OS=Prochlorococcus marinus (strain MIT 9313) GN=clpB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.534e-45
Identity = 90/119 (75.63%), Postives = 101/119 (84.87%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTELSKALA  +F +E ALVRIDMSEYMEKH++ RLIGAPPGYVGYE  GQLTE VRRRPY VIL DE++KAH DVFNV+L  LDDGRVTD QG T  FTNTV+I+TSN+GSQ ILD+
Sbjct:  616 GKTELSKALASQLFDSEAALVRIDMSEYMEKHSVSRLIGAPPGYVGYEAGGQLTEAVRRRPYAVILFDEVEKAHQDVFNVMLQILDDGRVTDGQGRTVDFTNTVLILTSNIGSQSILDL 734          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNPX (Chaperone protein clpB 1 OS=Synechococcus sp. (strain WH8102) GN=clpB1 PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 5.103e-44
Identity = 87/119 (73.11%), Postives = 101/119 (84.87%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTELSKALA  +F +++A+VRIDMSEYMEKH + RLIGAPPGYVGYE  GQLTE VRRRPY VIL DE++KAH DVFNV+L  LDDGRVTD QG T  FTNTV+I+TSN+GSQ IL++
Sbjct:  615 GKTELSKALANRLFDSDDAMVRIDMSEYMEKHTVSRLIGAPPGYVGYEAGGQLTEAVRRRPYAVILFDEVEKAHPDVFNVMLQILDDGRVTDGQGRTVDFTNTVLILTSNIGSQSILEL 733          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNY3 (Chaperone protein clpB 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.704e-44
Identity = 83/119 (69.75%), Postives = 102/119 (85.71%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDM 357
            GKTEL++ALA ++F +EEA+VRIDMSEYMEKHA+ RLIGAPPGYVGYEE GQL+E VRRRPY V+L DE++KAH DVFN++L  LDDGR+TDSQG    F NT+I+MTSN+GS +IL +
Sbjct:  625 GKTELARALAGFLFDSEEAMVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLSEAVRRRPYSVVLLDEVEKAHLDVFNILLQVLDDGRITDSQGRVVDFRNTIIVMTSNIGSDHILSL 743          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB_BDEBA (Chaperone protein clpB OS=Bdellovibrio bacteriovorus GN=clpB PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.137e-43
Identity = 87/118 (73.73%), Postives = 99/118 (83.90%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILD 354
            GKTE  KALA ++F  E+A+VRIDMSEYMEKHA+ RLIGAPPGYVGYEE GQLTE VRRRPY V+L DE++KAH DVFN++L  LDDGR+TD QG T  F NTV+IMTSNVGSQ ILD
Sbjct:  612 GKTETVKALAEFLFDDEQAVVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTESVRRRPYSVVLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVLIMTSNVGSQSILD 729          
BLAST of CX300169 vs. ExPASy Swiss-Prot
Match: CLPB1_ANASP (Chaperone protein clpB 1 OS=Anabaena sp. (strain PCC 7120) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.137e-43
Identity = 81/122 (66.39%), Postives = 104/122 (85.25%), Query Frame = 1
Query:    1 GKTELSKALAFYMFYTEEALVRIDMSEYMEKHAILRLIGAPPGYVGYEE*GQLTEGVRRRPYLVILDDEIDKAHSDVFNVVLHNLDDGRVTDSQGLTESFTNTVIIMTSNVGSQYILDMDDE 366
            GKTEL++ALA ++F  ++ALVR+DMSEYMEKH++ RL+GAPPGYVGYEE GQL+E VRR PY V+L DE++KAH DVFN++L  LDDGR+TDSQG T  F NTVI+MTSN+GS++ILD+  +
Sbjct:  619 GKTELARALAQFLFDADDALVRLDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLSEAVRRHPYSVVLLDEVEKAHPDVFNILLQVLDDGRITDSQGRTVDFRNTVIVMTSNIGSEHILDVSGD 740          
The following BLAST results are available for this feature:
BLAST of CX300169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB1_THEEB3.415e-4878.99Chaperone protein clpB 1 OS=Thermosynechococcus el... [more]
CLPB2_ANASP5.825e-4878.99Chaperone protein clpB 2 OS=Anabaena sp. (strain P... [more]
CLPB_PLEBO6.440e-4777.97Chaperone protein clpB OS=Plectonema boryanum GN=c... [more]
CLPB1_SYNE76.440e-4775.63Chaperone protein clpB 1 OS=Synechococcus elongatu... [more]
CLPB2_SYNY37.120e-4676.47Chaperone protein clpB 2 OS=Synechocystis sp. (str... [more]
CLPB_PROMM3.534e-4575.63Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB1_SYNPX5.103e-4473.11Chaperone protein clpB 1 OS=Synechococcus sp. (str... [more]
CLPB1_SYNY38.704e-4469.75Chaperone protein clpB 1 OS=Synechocystis sp. (str... [more]
CLPB_BDEBA1.137e-4373.73Chaperone protein clpB OS=Bdellovibrio bacteriovor... [more]
CLPB1_ANASP1.137e-4366.39Chaperone protein clpB 1 OS=Anabaena sp. (strain P... [more]

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Properties
Property NameValue
Genbank descriptionC07007A09SK SaltLeaf1 Citrus clementina cDNA clone C07007A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300169 ID=CX300169; Name=CX300169; organism=Citrus clementina; type=EST; length=367bp
GGAAAGACTGAACTGTCTAAGGCACTAGCTTTCTACATGTTCTACACTGA
AGAGGCCCTTGTACGAATTGATATGAGTGAATATATGGAAAAGCATGCAA
TTTTAAGATTGATTGGAGCCCCACCTGGTTATGTGGGATATGAGGAATGA
GGTCAGTTGACGGAGGGAGTTCGCCGTAGGCCCTATCTAGTAATTCTGGA
CGACGAGATTGACAAGGCCCACTCTGATGTATTTAATGTGGTTCTTCACA
ATCTGGATGATGGGAGAGTTACTGATTCACAGGGTCTTACTGAGAGTTTC
ACCAATACTGTCATCATTATGACTTCAAACGTGGGGTCACAATACATACT
TGATATGGATGATGAGA
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