CX300178

Overview
NameCX300178
Unique NameCX300178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length469
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300178_ssr370 microsatellite CX300178_ssr370:370..384. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig102 contig Ccv1_Contig102:232..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300178 vs. ExPASy Swiss-Prot
Match: NLTP_VIGUN (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.788e-24
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 VAEAATCNPTELSPCAPAITSSAPPSRACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 216
            VAEA TCNPTELS C PAIT  + PS  CC+K++ Q PCLC ++++P+LKQYVNSP AK+V++ CG+ YP C
Sbjct:   28 VAEAVTCNPTELSSCVPAITGGSKPSSTCCSKLKVQEPCLCNYIKNPSLKQYVNSPGAKKVLSNCGVTYPNC 99          
BLAST of CX300178 vs. ExPASy Swiss-Prot
Match: NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.886e-21
Identity = 38/67 (56.72%), Postives = 53/67 (79.10%), Query Frame = 1
Query:   16 TCNPTELSPCAPAITSSAPPSRACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 216
            TC+P +LSPC   I S AP    CC K+R+QRPCLCG+L++P+L+QYVNSPNA+++ + CG+P P+C
Sbjct:    2 TCSPVQLSPCLGPINSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLASNCGVPVPQC 68          
BLAST of CX300178 vs. ExPASy Swiss-Prot
Match: NLTP2_MAIZE (Probable non-specific lipid-transfer protein 2 OS=Zea mays PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.090e-15
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   10 AATCNPTELSPCA-PAITSSAPPSRACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 216
            A  CNP +L+PCA PA+   A P  ACC ++R Q+ CLCG+ R PN   Y+ SPNA R+ A C +P PRC
Sbjct:    1 ANPCNPAQLTPCAGPALFGGAVPP-ACCAQLRAQQGCLCGYARSPNYGSYIRSPNAARLFAICNLPMPRC 69          
BLAST of CX300178 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP-2 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 5.271e-15
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1
Query:   13 ATCNPTELSPCAPAITSSAPPSRACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 216
            A+CN  +L+ CA AI   A P+ ACC+ +R Q+ C C F +DP   +YVNSPNA++ +++CGI  P C
Sbjct:   28 ASCNAGQLTVCAGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of CX300178 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSJ (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. japonica GN=LTP-2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.417e-14
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   13 ATCNPTELSPCAPAITSSAPPSRACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 216
            A CN  +L+ C  AI   A P+ ACC+ +R Q+ C C F +DP   +YVNSPNA++ +++CGI  P C
Sbjct:   28 AGCNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of CX300178 vs. ExPASy Swiss-Prot
Match: NLTP2_HORVU (Probable non-specific lipid-transfer protein OS=Hordeum vulgare GN=LTP2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.417e-14
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1
Query:   13 ATCNPTELSPCAPAITSSAPPSRACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 216
            A C P +L+ CA AI     PS  CC  +R Q+ CLC +++DPN   YV+SP+A+  +  CGIP P C
Sbjct:   35 AACEPAQLAVCASAILGGTKPSGECCGNLRAQQGCLCQYVKDPNYGHYVSSPHARDTLNLCGIPVPHC 102          
BLAST of CX300178 vs. ExPASy Swiss-Prot
Match: NLT2P_WHEAT (Non-specific lipid-transfer protein 2P OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.933e-13
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   19 CNPTELSPCAPAITSSAPPSRACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 216
            C  ++L+ CA AI S A PS  CC  +R Q+PC C + +DP   QY+ SP+A+  + +CG+  P C
Sbjct:    2 CQASQLAVCASAILSGAKPSGECCGNLRAQQPCFCQYAKDPTYGQYIRSPHARDTLQSCGLAVPHC 67          
BLAST of CX300178 vs. ExPASy Swiss-Prot
Match: NLT2G_WHEAT (Non-specific lipid-transfer protein 2G OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.176e-12
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   19 CNPTELSPCAPAITSSAPPSRACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 216
            C  ++L+ CA AI S A PS  CC  +R Q+ C C + +DP   QY+ SP+A+  + +CG+  P C
Sbjct:    2 CQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVPHC 67          
The following BLAST results are available for this feature:
BLAST of CX300178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NLTP_VIGUN2.788e-2461.11Probable non-specific lipid-transfer protein AKCS9... [more]
NLTP2_PRUAR2.886e-2156.72Non-specific lipid-transfer protein 2 OS=Prunus ar... [more]
NLTP2_MAIZE3.090e-1551.43Probable non-specific lipid-transfer protein 2 OS=... [more]
NLTPX_ORYSI5.271e-1547.06Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTPX_ORYSJ3.417e-1445.59Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTP2_HORVU3.417e-1445.59Probable non-specific lipid-transfer protein OS=Ho... [more]
NLT2P_WHEAT4.933e-1342.42Non-specific lipid-transfer protein 2P OS=Triticum... [more]
NLT2G_WHEAT4.176e-1240.91Non-specific lipid-transfer protein 2G OS=Triticum... [more]
back to top
Properties
Property NameValue
Genbank descriptionC07007B06SK SaltLeaf1 Citrus clementina cDNA clone C07007B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300178 ID=CX300178; Name=CX300178; organism=Citrus clementina; type=EST; length=469bp
GTGGCAGAGGCAGCGACGTGCAACCCTACGGAGCTGAGCCCATGTGCGCC
AGCAATCACATCGTCGGCACCGCCGTCGAGAGCATGCTGCAACAAGATGA
GGCAGCAGAGGCCATGCCTTTGTGGGTTCCTGAGGGACCCTAACCTGAAG
CAATATGTTAACTCTCCCAATGCTAAAAGGGTTATTGCTACCTGCGGAAT
TCCCTATCCTCGGTGTTAGGGTTAATAATACGCCTTGTTTAATTAGTGCT
TAAAAGGAGGGTGTTACTAAATAAAATCTTGAGAGGTGCATGGTTATGTT
GGCATTAGTTTACTAGTGAAGCTATGAAAAAATATATGAATAGCAATATG
TGCGAATATGAGGTTAATTAATAAAATAAAATAATAAGTTGTGGTTGTTG
TATTTATGTTATGTACTCATATGCTGCTTCTTTTGTTTTCGTTATTAAAA
AAAAAAAAAAAAAAAAAAA
back to top