CX300182

Overview
NameCX300182
Unique NameCX300182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300182 vs. ExPASy Swiss-Prot
Match: THIK2_ARATH (3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.251e-29
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 2
Query:    2 LAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCADELCNVRKVESNNFLSKD 217
            +AIGHPLG TGARCVATLLHEMKRRG+DCRFGV+SMCIGTGMGAAAVFERGD  DEL N RKVE+   LSKD
Sbjct:  389 MAIGHPLGATGARCVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGDGVDELRNARKVEAQGLLSKD 460          
BLAST of CX300182 vs. ExPASy Swiss-Prot
Match: THIK1_ARATH (3-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.783e-26
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 2
Query:    2 LAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCADELCNVRKV 190
            +AIGHPLG TGARCVATLLHEMKRRG+DCRFGV+SMCIG+GMGAAAVFERG   DELC+VRKV
Sbjct:  381 IAIGHPLGATGARCVATLLHEMKRRGKDCRFGVVSMCIGSGMGAAAVFERGGGVDELCDVRKV 443          
BLAST of CX300182 vs. ExPASy Swiss-Prot
Match: THIK5_ARATH (3-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidopsis thaliana GN=KAT5 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.972e-25
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 2
Query:    2 LAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCADELCNVR 184
            +AIGHPLG TGARCVATLLHEMKRRG+DCRFGVISMCIGTGMGAAAVFERGD  D L N R
Sbjct:  390 IAIGHPLGATGARCVATLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGDSVDNLSNAR 450          
BLAST of CX300182 vs. ExPASy Swiss-Prot
Match: THIKB_RAT (3-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus norvegicus GN=Acaa1b PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.772e-14
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 2
Query:    2 LAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 148
            +A+GHPLG TGAR V TLL+E+KRRGR   +GV+SMCIGTGMGAAAVFE
Sbjct:  373 IALGHPLGCTGARQVVTLLNELKRRGRRA-YGVVSMCIGTGMGAAAVFE 420          
BLAST of CX300182 vs. ExPASy Swiss-Prot
Match: THIKB_MOUSE (3-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musculus GN=Acaa1b PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.772e-14
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 2
Query:    2 LAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 148
            +A+GHPLG TGAR V TLL+E+KRRGR   +GV+SMCIGTGMGAAAVFE
Sbjct:  373 IALGHPLGCTGARQVVTLLNELKRRGRRA-YGVVSMCIGTGMGAAAVFE 420          
BLAST of CX300182 vs. ExPASy Swiss-Prot
Match: THIKA_RAT (3-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus norvegicus GN=Acaa1a PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.772e-14
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 2
Query:    2 LAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 148
            +A+GHPLG TGAR V TLL+E+KRRGR   +GV+SMCIGTGMGAAAVFE
Sbjct:  373 IALGHPLGCTGARQVVTLLNELKRRGRRA-YGVVSMCIGTGMGAAAVFE 420          
BLAST of CX300182 vs. ExPASy Swiss-Prot
Match: THIKA_MOUSE (3-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musculus GN=Acaa1a PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.772e-14
Identity = 37/49 (75.51%), Postives = 43/49 (87.76%), Query Frame = 2
Query:    2 LAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 148
            +A+GHPLG TGAR V TLL+E+KRRGR   +GV+SMCIGTGMGAAAVFE
Sbjct:  373 IALGHPLGCTGARQVVTLLNELKRRGRRA-YGVVSMCIGTGMGAAAVFE 420          
BLAST of CX300182 vs. ExPASy Swiss-Prot
Match: THIK_HUMAN (3-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapiens GN=ACAA1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.953e-13
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 2
Query:    2 LAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 148
            +A+GHPLG TGAR V TLL+E+KRRG+   +GV+SMCIGTGMGAAAVFE
Sbjct:  373 VALGHPLGCTGARQVITLLNELKRRGKRA-YGVVSMCIGTGMGAAAVFE 420          
BLAST of CX300182 vs. ExPASy Swiss-Prot
Match: FADA_BACSU (3-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fadA PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.043e-11
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 2
Query:    2 LAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 148
            +A+GHPLG TG +   +L+HEMKRR    +FGV++MCIG GMGAA VFE
Sbjct:  343 IALGHPLGCTGTKLTLSLIHEMKRRNE--QFGVVTMCIGGGMGAAGVFE 389          
The following BLAST results are available for this feature:
BLAST of CX300182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
THIK2_ARATH2.251e-2983.333-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidop... [more]
THIK1_ARATH1.783e-2685.713-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidop... [more]
THIK5_ARATH1.972e-2586.893-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidop... [more]
THIKB_RAT7.772e-1475.513-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus n... [more]
THIKB_MOUSE7.772e-1475.513-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musc... [more]
THIKA_RAT7.772e-1475.513-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus n... [more]
THIKA_MOUSE7.772e-1475.513-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musc... [more]
THIK_HUMAN2.953e-1373.473-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapie... [more]
FADA_BACSU8.043e-1161.223-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fa... [more]
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Properties
Property NameValue
Genbank descriptionC07007B10SK SaltLeaf1 Citrus clementina cDNA clone C07007B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300182 ID=CX300182; Name=CX300182; organism=Citrus clementina; type=EST; length=432bp
ACTTGCCATTGGGCATCCTCTGGGCACAACAGGTGCACGCTGTGTTGCAA
CTCTATTGCATGAGATGAAGAGGCGAGGCAGAGACTGCCGCTTTGGAGTG
ATATCAATGTGCATAGGCACAGGAATGGGGGCAGCAGCTGTTTTCGAAAG
AGGTGACTGTGCCGATGAGCTTTGCAATGTCAGGAAAGTGGAAAGCAACA
ATTTCTTATCTAAGGATGTTCTGTAGATTACCATTTGTCTGCTGCAGCAT
GTTCTTGTGGAACGATCATATTGTGTTTGGAATCCGAGTATTTTTAATGA
ACAGTTATATGTAATAAGATTGCTTTGTTGTGATCACAAAGCCGACCACA
GGTCACACAGCTGTCTGTATCTTCGGTTTTGATATGATTAATTTAAATAT
CGTCACACTTTATGAAAAAAAAAAAAAAAAAA
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