CX300185

Overview
NameCX300185
Unique NameCX300185
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:1061..1490. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 8.048e-32
Identity = 65/85 (76.47%), Postives = 69/85 (81.18%), Query Frame = 3
Query:    3 KTFAQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVANNWK 257
            KTFA+EVNAAF ESADNELKGILSVCDEPLVS+DFRC              MGDDMVKVIAW+DNEWGYSQRVVDLADIVAN W+
Sbjct:  317 KTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ 401          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 3.994e-31
Identity = 64/85 (75.29%), Postives = 68/85 (80.00%), Query Frame = 3
Query:    3 KTFAQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVANNWK 257
            KTFA+EVNAAF +SA+ ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAW+DNEWGYSQRVVDLADIVANNWK
Sbjct:  312 KTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 396          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.813e-31
Identity = 64/85 (75.29%), Postives = 67/85 (78.82%), Query Frame = 3
Query:    3 KTFAQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVANNWK 257
            KTFA+EVNAAF E+AD ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAW+DNEWGYSQRVVDLADIVAN WK
Sbjct:  308 KTFAEEVNAAFREAADKELKGILDVCDEPLVSVDFRCSDVSSTVDASLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQWK 392          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.898e-31
Identity = 63/85 (74.12%), Postives = 68/85 (80.00%), Query Frame = 3
Query:    3 KTFAQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVANNWK 257
            KTFA+EVNAAF ++A+ ELKGIL VCDEPLVSVDFRC              MGDDMVKVIAW+DNEWGYSQRVVDLADIVANNWK
Sbjct:  149 KTFAEEVNAAFRDAAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 233          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 7.532e-30
Identity = 63/85 (74.12%), Postives = 66/85 (77.65%), Query Frame = 3
Query:    3 KTFAQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVANNWK 257
            KTFA+EVN AF ESA  EL GILSVCDEPLVSVDFRC              MGDD+VKVIAW+DNEWGYSQRVVDLADIVANNWK
Sbjct:  321 KTFAEEVNEAFRESAAKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDLVKVIAWYDNEWGYSQRVVDLADIVANNWK 405          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.330e-26
Identity = 57/85 (67.06%), Postives = 62/85 (72.94%), Query Frame = 3
Query:    3 KTFAQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVANNWK 257
            KT A+EVN AF ++A NEL GIL VCD PLVSVDFRC              MGDDMVKVI+W+DNEWGYSQRVVDLADI AN WK
Sbjct:  319 KTLAEEVNQAFRDAAANELTGILEVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVISWYDNEWGYSQRVVDLADICANQWK 403          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.737e-26
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 3
Query:   12 AQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVANNW 254
            A++VNAAF ++AD  LKG+L+VCDEPLVSVDFRC              MGDDMVKV+AW+DNEWGYSQRVVDLA +VANNW
Sbjct:  311 AEDVNAAFRKAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANNW 391          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.625e-24
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 3
Query:   12 AQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVANNW 254
            A++VNAAF ++A+  LKGIL VCD PLVSVDFRC              MGDDMVKV+AW+DNEWGYSQRVVDLA +VAN W
Sbjct:  342 AEDVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKW 422          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.729e-24
Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 3
Query:    3 KTFAQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVANNW 254
            KTFA+EVNAAF E+A+  +KG+L V D PLVS+DF+C              MGDDMVKV+AW+DNEWGYSQRVVDLA++ A  W
Sbjct:  289 KTFAEEVNAAFREAANGPMKGVLHVEDAPLVSIDFKCTDQSTSIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAEVTAKKW 372          
BLAST of CX300185 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.003e-23
Identity = 50/81 (61.73%), Postives = 58/81 (71.60%), Query Frame = 3
Query:   12 AQEVNAAFTESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWHDNEWGYSQRVVDLADIVANNW 254
            A++VN AF ++A   LKG+L VCD PLVSVDFRC              MG DMVKV+AW+DNEWGYSQRVVDLAD+VAN W
Sbjct:  341 AEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSSTIDSSLTMVMGGDMVKVVAWYDNEWGYSQRVVDLADLVANKW 421          
The following BLAST results are available for this feature:
BLAST of CX300185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
G3PA_SPIOL8.048e-3276.47Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH3.994e-3175.29Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC6.813e-3175.29Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SINAL8.898e-3174.12Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA7.532e-3074.12Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE1.330e-2667.06Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_TOBAC1.737e-2666.67Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_PEA1.625e-2464.20Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_CHLRE4.729e-2459.52Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_SPIOL4.003e-2361.73Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionC07007C01SK SaltLeaf1 Citrus clementina cDNA clone C07007C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300185 ID=CX300185; Name=CX300185; organism=Citrus clementina; type=EST; length=430bp
AGAAAACCTTCGCACAAGAGGTGAACGCCGCTTTCACAGAAAGCGCTGAC
AATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGCCCCTCGTTTCGGT
CGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGATTCATCTCTCACAC
TTGACATGGGAGACGACATGGTTAAGGTGATTGCATGGCATGACAATGAA
TGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACATTGTTGCCAACAA
CTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCTGTAATCGGCACAA
CGATGGTCTTGTTTTTCATTTTTGGCTCCCCCATTTATTGTTCTGCGTCT
TAGAATTTGTAGAATGTATAACACTATCTTATTATGGAACCTTTTTCCTT
TGCCTGTCATTAATCATTATGCAATAAAAT
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