CX300186

Overview
NameCX300186
Unique NameCX300186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length391
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig357 contig Ccv1_Contig357:136..526. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX300186 vs. ExPASy Swiss-Prot
Match: Y1648_ARATH (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.082e-37
Identity = 81/122 (66.39%), Postives = 93/122 (76.23%), Query Frame = 2 
Query:   14 MGNTIGGRRK-AKVMKIDGETIKLKTPIQASEVVKDYPGYVLLDSEAVKHFGIRAKPLEPRQQLKPKKVYFLVELPKLPDEEKIT--------RRVRSGIQMSAKDRLECLMLSRRAVSDLT 352
            MGN+I  +RK AKVMKIDGET ++KTP+ A EV  DYPGYVLLDS+AVKHFG+R+KPLEP Q LKPKK YFLVELPKLP E            RRV SGI + AK+RL+ LMLSRR VSD+T
Sbjct:    1 MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEPNQTLKPKKTYFLVELPKLPPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRRTVSDVT 122
The following BLAST results are available for this feature:
BLAST of CX300186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1648_ARATH2.082e-3766.39Uncharacterized protein At1g66480 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC07007C02SK SaltLeaf1 Citrus clementina cDNA clone C07007C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300186 ID=CX300186; Name=CX300186; organism=Citrus clementina; type=EST; length=391bp
AAAGTATTAAGATATGGGGAACACAATAGGTGGAAGAAGGAAAGCAAAAG
TGATGAAGATTGATGGAGAAACAATAAAATTAAAGACTCCAATTCAGGCT
AGTGAAGTTGTTAAAGACTACCCAGGTTATGTTCTATTGGATTCAGAAGC
TGTGAAGCATTTTGGCATTAGGGCAAAACCCTTGGAGCCACGGCAACAAC
TTAAGCCCAAGAAAGTATATTTCTTGGTGGAGCTGCCCAAGCTTCCTGAT
GAGGAAAAGATCACGAGAAGAGTGCGTTCTGGGATTCAGATGAGCGCTAA
GGACAGGCTCGAGTGCTTGATGCTGTCAAGGAGGGCGGTTTCGGATCTTA
CTGCGGTTAATGTAAGGTCGAGCCACGGCAGTGAGGTGGCA
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