CX300189

Overview
NameCX300189
Unique NameCX300189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length383
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9469 contig Ccv1_Contig9469:405..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300189 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.858e-23
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    4 PWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIVDINVQ 333
            PW I++ E++ ++R D+PG+++ DVKV VE+ MLVIK       E   D S       W S  Y SY TR+ LPDN E +K++AE+K+GVLYITIPK     K++D+ VQ
Sbjct:   79 PWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDS-------WSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTKVERKVIDVQVQ 181          
BLAST of CX300189 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.914e-22
Identity = 47/110 (42.73%), Postives = 73/110 (66.36%), Query Frame = 1
Query:    4 PWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIVDINVQ 333
            PW I+E E++ K+R D+PG+S+ DVK+ VE+++LVIK E+ +           + ++ W      SY TR+ LPDN E +KI+AE+K+GVL+ITIPK     K++D+ +Q
Sbjct:  128 PWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKE----------DSDDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVERKVIDVQIQ 227          
BLAST of CX300189 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.914e-22
Identity = 48/110 (43.64%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    4 PWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIVDINVQ 333
            PW I++ E++ ++R D+PG+S+ DVKV VE+ +LVIK++  + N           E+ W    Y  Y TR+ LPDN E EK++AE+KDGVLYITIPK      ++D+ +Q
Sbjct:  132 PWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGG---------EDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTKIERTVIDVQIQ 232          
BLAST of CX300189 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.266e-22
Identity = 50/110 (45.45%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    1 TPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIVDINV 330
            TPW I + EN+ K+R D+PG+S+ DVKV VE  MLVIK E  +  +         ++  W  N Y SY TR++LPDNV  +KI+AE+K+GVL+I+IPK     K++D+ +
Sbjct:  133 TPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGR-------DKHSWGRN-YSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKKVIDVQI 234          
BLAST of CX300189 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.043e-21
Identity = 49/110 (44.55%), Postives = 75/110 (68.18%), Query Frame = 1
Query:    4 PWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIVDINVQ 333
            PW I++ EN+ K+R D+PG+S+ +VKV VE+ +LVIK E  ++ E+  D S       W  N Y SY TR++LPDNV+ +K++AE+K+GVL I+IPK     K+ D+ ++
Sbjct:  141 PWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEH-KKEESGKDDS-------WGRN-YSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEKKVTDVEIK 241          
BLAST of CX300189 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.832e-19
Identity = 42/110 (38.18%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    4 PWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIVDINVQ 333
            PW + E + + ++R D+PG+SR +VKV VE+  LVI+ E  +      +GS    +  W      SY  R+ALPD  +  K++AE+K+GVL +T+PK     K++D+ VQ
Sbjct:  134 PWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSG---DGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTEVERKVIDVQVQ 240          
BLAST of CX300189 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.736e-18
Identity = 43/111 (38.74%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    4 PWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAE-KAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAKIVDINVQ 333
            PW I E E + K+R D+PG+SR +V+V VE+  LVI+ E K +  E   +G     +  W      SY  R+ALPD  +  +++AE+K+GVL +++PK  +  K++D+ VQ
Sbjct:  132 PWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGG----DGWWKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVPKRETERKVIDVQVQ 238          
BLAST of CX300189 vs. ExPASy Swiss-Prot
Match: HS26M_ARATH (26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.202e-16
Identity = 40/108 (37.04%), Postives = 72/108 (66.67%), Query Frame = 1
Query:   13 IRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNVEFEKIQAEVKDGVLYITIPKASSTAK-IVDINVQ 333
            ++E ++ YK+R +VPG+++ DVK+ V + +L IK +    ++A  +  + EE+E W S  YG Y+T ++LPD+ + E I+AE+K+GVL + IP+     K + +I+V+
Sbjct:  129 VKEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGD----HKAEEEKGSPEEDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNGVLNLVIPRTEKPKKNVQEISVE 232          
BLAST of CX300189 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.825e-12
Identity = 42/112 (37.50%), Postives = 66/112 (58.93%), Query Frame = 1
Query:    7 WAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV-EFEKIQAEVKDGVLYITIPKASSTAKIVDINVQ*D 339
            W  RETE+   +RLD+PG+ + DVK+ VE++ L IK E+             +E EE   +G   +S+RI LP+ + + + I+AE+K+GVL +T+PK     +   INV+ D
Sbjct:  103 WDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEG-----------AKESEEKEKSG-RRFSSRIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNVINVKVD 202          
BLAST of CX300189 vs. ExPASy Swiss-Prot
Match: HS22M_SOYBN (Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.520e-11
Identity = 38/112 (33.93%), Postives = 67/112 (59.82%), Query Frame = 1
Query:    7 WAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANTDGSTVEEEEEWPSNGYGSYSTRIALPDNV-EFEKIQAEVKDGVLYITIPKASSTAK--IVDINVQ 333
            W  RETE+   +R+D+PG+++ DVK+ VE++ L+IK E A+  +        EEE          Y++RI LPD + + ++I+AE+K+GVL + +PK     +  ++ + V+
Sbjct:  114 WDARETEDALHLRVDMPGLAKEDVKISVEQNTLIIKGEGAKEGD--------EEESA------RRYTSRIDLPDKLYKIDQIRAEMKNGVLKVVVPKMKEEERKDVISVKVE 211          
The following BLAST results are available for this feature:
BLAST of CX300189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
HS22C_SOYBN3.858e-2346.36Small heat shock protein, chloroplastic (Fragment)... [more]
HS25P_ARATH1.914e-2242.7325.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_PEA1.914e-2243.64Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS21C_SOLLC3.266e-2245.45Small heat shock protein, chloroplastic OS=Solanum... [more]
HS22C_PETHY8.043e-2144.55Small heat shock protein, chloroplastic OS=Petunia... [more]
HS26P_ORYSJ9.832e-1938.1826.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS21C_WHEAT3.736e-1838.74Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26M_ARATH1.202e-1637.0426.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_PEA6.825e-1237.50Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]
HS22M_SOYBN1.520e-1133.93Heat shock 22 kDa protein, mitochondrial OS=Glycin... [more]

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Properties
Property NameValue
Genbank descriptionC07007C05SK SaltLeaf1 Citrus clementina cDNA clone C07007C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300189 ID=CX300189; Name=CX300189; organism=Citrus clementina; type=EST; length=383bp
ACGCCTTGGGCCATCAGGGAAACGGAAAACGACTACAAGATTAGGTTAGA
CGTGCCTGGCATGAGCAGGAATGATGTTAAGGTACGGGTTGAAGAGAGCA
TGCTCGTAATCAAGGCAGAAAAGGCTCAAAGGAACGAAGCAAACACTGAT
GGAAGTACAGTTGAGGAAGAAGAAGAGTGGCCAAGCAATGGTTACGGAAG
CTACAGCACTAGAATTGCATTGCCTGACAACGTAGAGTTTGAGAAGATTC
AAGCAGAGGTGAAAGATGGCGTACTGTATATAACCATTCCAAAGGCCAGC
TCCACCGCCAAAATCGTCGACATTAATGTCCAATAGGACAAGTATTCTGG
TAACCTCAAGTTCCACATAGGACAAACCTAGAT
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