CX300217

Overview
NameCX300217
Unique NameCX300217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.669e-27
Identity = 62/132 (46.97%), Postives = 86/132 (65.15%), Query Frame = 2
Query:   14 MGLPPHSDHGLLTILMQNDHV-GLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYLQLQQSNQLKGKSCLDHVKV 406
            +GL PHSD   LT+L+Q + V GLH++ D KW+P+ P  G+FVVNIGD +EI+SNG YKS+ HRAV+N    R+S+A  H P   T +GP  DL+  +     Y+ I Y +YL    + +L GKS LD +K+
Sbjct:  223 LGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAFHDPEYGTKIGPLPDLV--KENGVKYKTIDYEDYLIRSSNIKLDGKSLLDQMKL 352          
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.263e-26
Identity = 60/136 (44.12%), Postives = 90/136 (66.18%), Query Frame = 2
Query:    2 PEVVMGLPPHSDHGLLTILMQ-NDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYLQLQQSNQLKGKSCLDHVKV 406
            P+ V+GL PHSD   LT+LMQ ND  GL ++ DGKW+PV P P +F+VNIGD +EI++NG Y+S+ HR VVN +  R+S+AT H   +   VGPA+ L++ + +   ++ +  +EY     S  L GK+ LD +++
Sbjct:  224 PDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQ-KVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358          
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: FLS_CITUN (Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.491e-24
Identity = 54/115 (46.96%), Postives = 75/115 (65.22%), Query Frame = 2
Query:    2 PEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREY 346
            P++ +G+  H+D   LT+L+ N+  GL V  D +WI     P + V++IGD +EILSNGKYK+VLHR  VN   TR+S      PP DTVVGP   L+D+EN PP Y+  K+++Y
Sbjct:  212 PDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDEN-PPKYKAKKFKDY 325          
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 4.966e-23
Identity = 49/118 (41.53%), Postives = 74/118 (62.71%), Query Frame = 2
Query:    2 PEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYLQL 355
            P+  +G PPH D  L+T+L+     GL V + G WI V+P P +FVVN G  +E+++NG  KS+ HRA+ N    R SVAT   P  + ++GPA++ L  EN PP YR   +R+++++
Sbjct:  200 PDKALGQPPHCDRNLITLLLPGAVNGLEVSYKGDWIKVDPAPNAFVVNFGQQLEVVTNGLLKSIEHRAMTNSALARTSVATFIMPTQECLIGPAKEFLSKEN-PPCYRTTMFRDFMRI 316          
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.106e-22
Identity = 56/138 (40.58%), Postives = 77/138 (55.80%), Query Frame = 2
Query:    2 PEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGP---PLDTVVGPAQDLLDNENRPPLYRGIKYREYLQLQQSNQLKGKSCLDHVKV 406
            PE+ MG   H+D G +TIL+Q+D  GL V H   W+ V P PGS VVNIGD +++LSN KY SV HRA+ N   +R+S+    G        + GP  +LL  +N PP YR    +++     +  L G S L   K+
Sbjct:  227 PELTMGTIQHTDIGFVTILLQDDMGGLQVLHQNHWVDVPPTPGSLVVNIGDFLQLLSNDKYLSVEHRAISNNVGSRMSITCFFGESPYQSSKLYGPITELLSEDN-PPKYRATTVKDHTSYLHNRGLDGTSALSRYKI 363          
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.887e-22
Identity = 60/131 (45.80%), Postives = 79/131 (60.31%), Query Frame = 2
Query:    2 PEVVMGLPPHSDHGLLTILMQNDHVGLHV-RHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYLQLQQSNQLKGKSCL 391
            P+  MGL  H+D  LLTIL QN+  GL V R D  W+ V P PGS VVN+GD   ILSNG +KSVLHRA VN    R+SVA   GP  D  + P   L+ +    PLY+ + ++EYL+ + ++  K  S +
Sbjct:  223 PDRAMGLAAHTDSTLLTILYQNNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQTRARLSVAFLWGPQSDIKISPVPKLV-SPVESPLYQSVTWKEYLRTKATHFNKALSMI 352          
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.465e-22
Identity = 52/129 (40.31%), Postives = 80/129 (62.02%), Query Frame = 2
Query:    2 PEVVMGLPPHSDHGLLTILMQNDHV-GLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNE-NRPPLYRGIKYREYLQLQQSNQLKGK 382
            PE++ GL  H+D G L +L Q+D V GLHV  DGKW+ V P   S V+N+GD +E+++NGKYKSV+HR +      R+S+A+ + P  D V+ PA  L++ E  +  LY    + +Y++L    + + K
Sbjct:  169 PELIKGLRAHTDAGGLILLFQDDKVSGLHVLKDGKWVDVPPMHHSIVINLGDQLEVITNGKYKSVMHRVIAQEDGNRMSIASFYNPGNDAVIYPAPALVEGEQEKTKLYPKFVFDDYMKLYVGLKFQAK 297          
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: FLS_MALDO (Flavonol synthase/flavanone 3-hydroxylase OS=Malus domestica GN=FLS PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.597e-21
Identity = 53/116 (45.69%), Postives = 71/116 (61.21%), Query Frame = 2
Query:    2 PEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYL 349
            P++ +G+  H+D   +TIL+ ND  GL    DG+W  V   P + V++IGD MEI+SNGKY SVLHR  VN   TRIS      PP D VVGP   L++  N+P  Y+  KY +Y+
Sbjct:  214 PDLALGVVAHTDMSTVTILVPNDVQGLQACKDGRWYDVKYIPNALVIHIGDQMEIMSNGKYTSVLHRTTVNKDKTRISWPVFLEPPADHVVGPHPQLVNAVNQPK-YKTKKYGDYV 328          
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.086e-21
Identity = 56/138 (40.58%), Postives = 80/138 (57.97%), Query Frame = 2
Query:    2 PEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPL---DTVVGPAQDLLDNENRPPLYRGIKYREYLQLQQSNQLKGKSCLDHVKV 406
            P++ +GL  HSD+  LTIL+Q+   GL V HD  W+ V P PG+ VVN+GD +++++N K+ SV HR + N    RISVA      L     V GP +++L  EN PP YR     EY +  +S    G S L ++K+
Sbjct:  229 PDLTLGLTKHSDNSFLTILLQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGPRISVACFFSSYLMANPRVYGPIKEILSEEN-PPNYRDTTITEYAKFYRSKGFDGTSGLLYLKI 365          
BLAST of CX300217 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.559e-21
Identity = 54/117 (46.15%), Postives = 73/117 (62.39%), Query Frame = 2
Query:    2 PEVVMGLPPHSDHGLLTILMQNDHVGLHV-RHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYL 349
            P+  MGL  H+D  L+TIL QN+  GL V R D  W+   P PGS VVN+GD + IL+NG + SVLHRA VN   +R S+A   GPP D ++ P   L+D   + PLY  + +++YL
Sbjct:  216 PDRAMGLAAHTDSTLMTILYQNNTAGLQVFRDDVGWVTAPPVPGSLVVNVGDLLHILTNGIFPSVLHRARVNHVRSRFSMAYLWGPPSDIMISPLPKLVD-PLQSPLYPSLTWKQYL 331          
The following BLAST results are available for this feature:
BLAST of CX300217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
NCS1_COPJA9.669e-2746.97S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
SRG1_ARATH1.263e-2644.12Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
FLS_CITUN4.491e-2446.96Flavonol synthase/flavanone 3-hydroxylase OS=Citru... [more]
IDS3_HORVU4.966e-2341.532'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
ACCH3_SOLLC1.106e-2240.581-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
G3OX1_ARATH1.887e-2245.80Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
ACCO3_CUCME2.465e-2240.311-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
FLS_MALDO1.597e-2145.69Flavonol synthase/flavanone 3-hydroxylase OS=Malus... [more]
ACCH1_ARATH2.086e-2140.581-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
G3OX2_ARATH3.559e-2146.15Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC07007E11SK SaltLeaf1 Citrus clementina cDNA clone C07007E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300217 ID=CX300217; Name=CX300217; organism=Citrus clementina; type=EST; length=420bp
GCCAGAAGTAGTGATGGGGCTGCCTCCTCATTCGGATCATGGCCTCTTAA
CCATCCTTATGCAGAATGACCATGTAGGTCTTCACGTACGGCACGATGGC
AAATGGATTCCCGTCAATCCTCCACCCGGCTCTTTCGTAGTCAACATAGG
AGACCACATGGAGATACTAAGTAACGGAAAGTACAAAAGCGTGTTGCACA
GAGCAGTAGTGAACGGCAAAGCAACAAGAATCTCCGTTGCAACGGCACAC
GGGCCTCCTCTTGACACGGTCGTGGGCCCTGCTCAGGATTTGCTTGACAA
TGAGAACCGACCCCCGTTGTATCGTGGGATCAAATATAGAGAGTATTTGC
AGCTTCAACAGAGCAATCAACTGAAAGGGAAATCCTGCTTGGACCACGTC
AAAGTCAATATCAATGATAC
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