CX300219

Overview
NameCX300219
Unique NameCX300219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2368 contig Ccv1_Contig2368:100..502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CHMP1_DICDI (Charged multivesicular body protein 1 OS=Dictyostelium discoideum GN=chmp1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.052e-32
Identity = 65/117 (55.56%), Postives = 93/117 (79.49%), Query Frame = 2
Query:   50 NHIMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQF 400
            N +  LKFTSK L++Q++K E+ E A K+K+KKAIE+GNMDGARIYA+N+IR + + +NYLRLASR+DAV +R++T  +M ++  SMANIVKS+E S+   +L+K++  MD FE+QF
Sbjct:    3 NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQF 119          
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CHM1B_HUMAN (Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.018e-31
Identity = 66/125 (52.80%), Postives = 93/125 (74.40%), Query Frame = 2
Query:   26 MGNTEKLLNHIMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQF 400
            M N EK   H+ +LKF +K L R A+KC+KEE A+K K+KKAI+KGNM+ ARI+AEN+IR + + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++ +L T NL+K+S  MD FE QF
Sbjct:    1 MSNMEK---HLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQF 122          
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CHM1B_BOVIN (Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.737e-31
Identity = 66/125 (52.80%), Postives = 93/125 (74.40%), Query Frame = 2
Query:   26 MGNTEKLLNHIMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQF 400
            M N EK   H+ +LKF +K L R A+KC+KEE A+K K+KKAI+KGNM+ ARI+AEN+IR + + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++ +L T NL+K+S  MD FE QF
Sbjct:    1 MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQF 122          
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CHM1B_DANRE (Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.054e-31
Identity = 63/125 (50.40%), Postives = 95/125 (76.00%), Query Frame = 2
Query:   26 MGNTEKLLNHIMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQF 400
            M + EK   H+ +LKF +K LQR ++KC+KEE A+K+KVKKAI+KGNM+ ARI+AEN+IR + + +N+LR+++R+DAV AR+ T   M  + KSMA +VK ++ +L + NL+K+S  M+ FE+QF
Sbjct:    1 MSSMEK---HLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQF 122          
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CH1B1_MOUSE (Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.621e-31
Identity = 64/125 (51.20%), Postives = 93/125 (74.40%), Query Frame = 2
Query:   26 MGNTEKLLNHIMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQF 400
            M N EK   H+ +LKF +K L R ++KC+KEE A+K K+KKAI+KGNM+ ARI+AEN+IR + + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++ +L + NL+K+S  MD FE QF
Sbjct:    1 MSNMEK---HLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQF 122          
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CHM1B_CHICK (Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.471e-30
Identity = 63/125 (50.40%), Postives = 93/125 (74.40%), Query Frame = 2
Query:   26 MGNTEKLLNHIMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQF 400
            M N EK   H+ +LKF +K L R +++C+KEE A+K K+KKAI+KGNM+ ARI+AEN+IR + + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++ +L + NL+K+S  MD FE QF
Sbjct:    1 MSNMEK---HLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQF 122          
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CH1B2_MOUSE (Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.471e-30
Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = 2
Query:   26 MGNTEKLLNHIMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQF 400
            M N EK   H+ +LKF +K L R A+KC+KEE A+K K+KKAI+KGN + ARI+AEN+IR + + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++ +L + NL+K+S  MD FE QF
Sbjct:    1 MSNMEK---HLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQF 122          
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CHM1B_XENLA (Charged multivesicular body protein 1b OS=Xenopus laevis GN=chmp1b PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.245e-29
Identity = 63/125 (50.40%), Postives = 91/125 (72.80%), Query Frame = 2
Query:   26 MGNTEKLLNHIMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQF 400
            M + EK   H+ +LKF +K L R A+KCEKEE  +K K+KKAI+KGN + ARI+AEN+IR + + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++ +L + NL+K+S  MD FE QF
Sbjct:    1 MSSMEK---HLFNLKFAAKELNRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQF 122          
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CHM1B_XENTR (Charged multivesicular body protein 1b OS=Xenopus tropicalis GN=chmp1b PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.054e-28
Identity = 62/125 (49.60%), Postives = 91/125 (72.80%), Query Frame = 2
Query:   26 MGNTEKLLNHIMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQF 400
            M + EK   ++ +LKF +K L R A+KCEKEE  +K K+KKAI+KGN + ARI+AEN+IR + + +N+LR+++R+DAV AR+ T   M  + KSMA +VKS++ +L + NL+K+S  MD FE QF
Sbjct:    1 MSSMEK---NLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQF 122          
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CHM1A_XENLA (Charged multivesicular body protein 1a OS=Xenopus laevis GN=chmp1a PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.686e-24
Identity = 50/114 (43.86%), Postives = 86/114 (75.44%), Query Frame = 2
Query:   56 IMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQ 397
            +  LKFT+K L++ A+K EK+ N ++ KVKKA+++ N++ AR+YAEN+IR + E +N+LR+ASR+DAV +++ T   M  + K+MA + K+++ +L++ +LQK+S  MD F++Q
Sbjct:    5 LFQLKFTAKQLEKLAKKAEKDSNTEQAKVKKALQQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSSMDLQKVSAVMDKFDQQ 118          
The following BLAST results are available for this feature:
BLAST of CX300219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CHMP1_DICDI2.052e-3255.56Charged multivesicular body protein 1 OS=Dictyoste... [more]
CHM1B_HUMAN1.018e-3152.80Charged multivesicular body protein 1b OS=Homo sap... [more]
CHM1B_BOVIN1.737e-3152.80Charged multivesicular body protein 1b OS=Bos taur... [more]
CHM1B_DANRE5.054e-3150.40Charged multivesicular body protein 1b OS=Danio re... [more]
CH1B1_MOUSE8.621e-3151.20Charged multivesicular body protein 1b-1 OS=Mus mu... [more]
CHM1B_CHICK1.471e-3050.40Charged multivesicular body protein 1b OS=Gallus g... [more]
CH1B2_MOUSE1.471e-3051.20Charged multivesicular body protein 1b-2 OS=Mus mu... [more]
CHM1B_XENLA1.245e-2950.40Charged multivesicular body protein 1b OS=Xenopus ... [more]
CHM1B_XENTR1.054e-2849.60Charged multivesicular body protein 1b OS=Xenopus ... [more]
CHM1A_XENLA2.686e-2443.86Charged multivesicular body protein 1a OS=Xenopus ... [more]

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Properties
Property NameValue
Genbank descriptionC07007F01SK SaltLeaf1 Citrus clementina cDNA clone C07007F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300219 ID=CX300219; Name=CX300219; organism=Citrus clementina; type=EST; length=403bp
ATTCTCAGATCCGAAACATTTCGCGATGGGAAACACGGAGAAGCTGTTGA
ATCATATCATGGACTTGAAATTCACCTCAAAATCTCTTCAACGCCAGGCG
AGAAAATGCGAGAAGGAAGAGAACGCCGACAAATTGAAGGTGAAAAAGGC
CATCGAGAAAGGCAACATGGACGGCGCCAGAATCTACGCCGAGAACTCCA
TCCGCATGCGCACCGAACAGATGAATTATCTCCGCCTCGCTTCTCGTCTC
GACGCCGTCGTGGCTCGTCTCGACACCCAGGCCAAAATGACCACCATTAA
TAAGTCCATGGCTAACATCGTCAAGTCCGTTGAATGCTCTCTCGCTACCG
GTAATTTGCAGAAGATGTCATAGACTATGGACTCATTTGAGAAGCAGTTT
GTG
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