CX300219
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CHMP1_DICDI (Charged multivesicular body protein 1 OS=Dictyostelium discoideum GN=chmp1 PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 2.052e-32 Identity = 65/117 (55.56%), Postives = 93/117 (79.49%), Query Frame = 2 Query: 50 NHIMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQF 400 N + LKFTSK L++Q++K E+ E A K+K+KKAIE+GNMDGARIYA+N+IR + + +NYLRLASR+DAV +R++T +M ++ SMANIVKS+E S+ +L+K++ MD FE+QF Sbjct: 3 NQLFQLKFTSKQLEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNYLRLASRIDAVASRVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQF 119
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CHM1B_HUMAN (Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B PE=1 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 1.018e-31 Identity = 66/125 (52.80%), Postives = 93/125 (74.40%), Query Frame = 2 Query: 26 MGNTEKLLNHIMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQF 400 M N EK H+ +LKF +K L R A+KC+KEE A+K K+KKAI+KGNM+ ARI+AEN+IR + + +N+LR+++R+DAV AR+ T M + KSMA +VKS++ +L T NL+K+S MD FE QF Sbjct: 1 MSNMEK---HLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQF 122
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CHM1B_BOVIN (Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 1.737e-31 Identity = 66/125 (52.80%), Postives = 93/125 (74.40%), Query Frame = 2 Query: 26 MGNTEKLLNHIMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQF 400 M N EK H+ +LKF +K L R A+KC+KEE A+K K+KKAI+KGNM+ ARI+AEN+IR + + +N+LR+++R+DAV AR+ T M + KSMA +VKS++ +L T NL+K+S MD FE QF Sbjct: 1 MSNMEK---HLFNLKFAAKELGRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEHQF 122
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CHM1B_DANRE (Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b PE=2 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 5.054e-31 Identity = 63/125 (50.40%), Postives = 95/125 (76.00%), Query Frame = 2 Query: 26 MGNTEKLLNHIMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQF 400 M + EK H+ +LKF +K LQR ++KC+KEE A+K+KVKKAI+KGNM+ ARI+AEN+IR + + +N+LR+++R+DAV AR+ T M + KSMA +VK ++ +L + NL+K+S M+ FE+QF Sbjct: 1 MSSMEK---HLFNLKFAAKELQRNSKKCDKEEKAEKVKVKKAIQKGNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDATLKSMNLEKISGLMEKFERQF 122
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CH1B1_MOUSE (Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1 PE=1 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 8.621e-31 Identity = 64/125 (51.20%), Postives = 93/125 (74.40%), Query Frame = 2 Query: 26 MGNTEKLLNHIMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQF 400 M N EK H+ +LKF +K L R ++KC+KEE A+K K+KKAI+KGNM+ ARI+AEN+IR + + +N+LR+++R+DAV AR+ T M + KSMA +VKS++ +L + NL+K+S MD FE QF Sbjct: 1 MSNMEK---HLFNLKFAAKELNRSSKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQF 122
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CHM1B_CHICK (Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 1.471e-30 Identity = 63/125 (50.40%), Postives = 93/125 (74.40%), Query Frame = 2 Query: 26 MGNTEKLLNHIMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQF 400 M N EK H+ +LKF +K L R +++C+KEE A+K K+KKAI+KGNM+ ARI+AEN+IR + + +N+LR+++R+DAV AR+ T M + KSMA +VKS++ +L + NL+K+S MD FE QF Sbjct: 1 MSNMEK---HLFNLKFAAKELNRNSKRCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQF 122
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CH1B2_MOUSE (Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2 PE=2 SV=2) HSP 1 Score: 131.339 bits (329), Expect = 1.471e-30 Identity = 64/125 (51.20%), Postives = 92/125 (73.60%), Query Frame = 2 Query: 26 MGNTEKLLNHIMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQF 400 M N EK H+ +LKF +K L R A+KC+KEE A+K K+KKAI+KGN + ARI+AEN+IR + + +N+LR+++R+DAV AR+ T M + KSMA +VKS++ +L + NL+K+S MD FE QF Sbjct: 1 MSNMEK---HLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQF 122
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CHM1B_XENLA (Charged multivesicular body protein 1b OS=Xenopus laevis GN=chmp1b PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.245e-29 Identity = 63/125 (50.40%), Postives = 91/125 (72.80%), Query Frame = 2 Query: 26 MGNTEKLLNHIMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQF 400 M + EK H+ +LKF +K L R A+KCEKEE +K K+KKAI+KGN + ARI+AEN+IR + + +N+LR+++R+DAV AR+ T M + KSMA +VKS++ +L + NL+K+S MD FE QF Sbjct: 1 MSSMEK---HLFNLKFAAKELNRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKSMNLEKISALMDKFEHQF 122
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CHM1B_XENTR (Charged multivesicular body protein 1b OS=Xenopus tropicalis GN=chmp1b PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.054e-28 Identity = 62/125 (49.60%), Postives = 91/125 (72.80%), Query Frame = 2 Query: 26 MGNTEKLLNHIMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQF 400 M + EK ++ +LKF +K L R A+KCEKEE +K K+KKAI+KGN + ARI+AEN+IR + + +N+LR+++R+DAV AR+ T M + KSMA +VKS++ +L + NL+K+S MD FE QF Sbjct: 1 MSSMEK---NLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQF 122
BLAST of CX300219 vs. ExPASy Swiss-Prot
Match: CHM1A_XENLA (Charged multivesicular body protein 1a OS=Xenopus laevis GN=chmp1a PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 2.686e-24 Identity = 50/114 (43.86%), Postives = 86/114 (75.44%), Query Frame = 2 Query: 56 IMDLKFTSKSLQRQARKCEKEENADKLKVKKAIEKGNMDGARIYAENSIRMRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSVECSLATGNLQKMS*TMDSFEKQ 397 + LKFT+K L++ A+K EK+ N ++ KVKKA+++ N++ AR+YAEN+IR + E +N+LR+ASR+DAV +++ T M + K+MA + K+++ +L++ +LQK+S MD F++Q Sbjct: 5 LFQLKFTAKQLEKLAKKAEKDSNTEQAKVKKALQQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSSMDLQKVSAVMDKFDQQ 118 The following BLAST results are available for this feature:
BLAST of CX300219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300219 ID=CX300219; Name=CX300219; organism=Citrus clementina; type=EST; length=403bpback to top |