CX300220

Overview
NameCX300220
Unique NameCX300220
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length379
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14470 contig Ccv1_Contig14470:638..1016. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX300220 vs. ExPASy Swiss-Prot
Match: SGAT_ARATH (Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.059e-20
Identity = 47/55 (85.45%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:    3 RIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPMIPSRI 167
            RIGHLG++NELQLLGCLAGVEMILKDVGYPV +GSGVAAAS YLQ++IP+IPSRI
Sbjct:  347 RIGHLGNVNELQLLGCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401
The following BLAST results are available for this feature:
BLAST of CX300220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SGAT_ARATH1.059e-2085.45Serine--glyoxylate aminotransferase OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionC07007F02SK SaltLeaf1 Citrus clementina cDNA clone C07007F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300220 ID=CX300220; Name=CX300220; organism=Citrus clementina; type=EST; length=379bp
TTAGAATCGGGCATCTCGGCCACCTGAATGAGTTGCAATTGTTGGGCTGT
CTCGCTGGTGTGGAGATGATACTAAAAGACGTGGGCTACCCGGTTAAGCT
GGGAAGCGGGGTTGCAGCTGCTTCTGCATACCTACAGAACAACATTCCTA
TGATCCCATCCAGGATCTGAGTCATCTTTCATCAATGTAATTACTTCTCT
TCTATTCATGCGCTTCAGGTCACTATGTACAAAGAATGTATAATTTCCTA
TGCTTGCTCTTATTAGAGGCTCACCGAGAAAACTCTCCTTTAATCATTGC
TTCTTGTATTGTGATGTACTTGAAACGTCTTATTAGTCCAGCCAAGTATT
TTATTTTTTAAAAAAAAAAAAAAAAAAAA
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