CX300227

Overview
NameCX300227
Unique NameCX300227
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300227_ssr20 microsatellite CX300227_ssr20:20..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX300227 vs. ExPASy Swiss-Prot
Match: SUT12_ARATH (Sulfate transporter 1.2 OS=Arabidopsis thaliana GN=SULTR1;2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.193e-33
Identity = 69/99 (69.70%), Postives = 85/99 (85.86%), Query Frame = 2
Query:    5 RWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSRAPKLVEE 301
            RWL +EEE+VKAA+  PRIQFLI+EMSPVTDIDTSGIHALE L++SL+KR++QLILANPGP+V+ KLH S F  ++G+DNI+LTVADAV +  PKL  E
Sbjct:  555 RWLHEEEEKVKAASL-PRIQFLIIEMSPVTDIDTSGIHALEDLYKSLQKRDIQLILANPGPLVIGKLHLSHFADMLGQDNIYLTVADAVEACCPKLSNE 652          
BLAST of CX300227 vs. ExPASy Swiss-Prot
Match: SUT13_ARATH (Sulfate transporter 1.3 OS=Arabidopsis thaliana GN=SULTR1;3 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.088e-32
Identity = 70/99 (70.71%), Postives = 83/99 (83.84%), Query Frame = 2
Query:    5 RWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSRAPKLVEE 301
            RWL DEEE V+AA   PRIQFLI+EMSPVTDIDTSGIHALE L++SL+KR++QL+LANPGP V++KLH S F  LIG D IFLTVA+AV S +PKL +E
Sbjct:  558 RWLTDEEEMVEAARL-PRIQFLIIEMSPVTDIDTSGIHALEDLYKSLQKRDIQLVLANPGPPVINKLHVSHFADLIGHDKIFLTVAEAVDSCSPKLSDE 655          
BLAST of CX300227 vs. ExPASy Swiss-Prot
Match: SUT2_STYHA (High affinity sulfate transporter 2 OS=Stylosanthes hamata GN=ST2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.589e-29
Identity = 65/96 (67.71%), Postives = 78/96 (81.25%), Query Frame = 2
Query:    2 LRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSRAPK 289
            LRWL DE  + +  +  P IQ LIVEMSPVTDIDTSGIHA E L+++L+KREVQL+LANPGPVV++KLHAS+   LIGED IFLTVADAV++  PK
Sbjct:  564 LRWLIDEGAQ-RTESELPEIQHLIVEMSPVTDIDTSGIHAFEELYKTLQKREVQLMLANPGPVVIEKLHASNLAELIGEDKIFLTVADAVATYGPK 658          
BLAST of CX300227 vs. ExPASy Swiss-Prot
Match: SUT1_STYHA (High affinity sulfate transporter 1 OS=Stylosanthes hamata GN=ST1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.245e-28
Identity = 65/96 (67.71%), Postives = 76/96 (79.17%), Query Frame = 2
Query:    2 LRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSRAPK 289
            LRWL DE  + +  +  P IQ LI EMSPV DIDTSGIHA E L+++L+KREVQLILANPGPVV++KLHAS  T LIGED IFLTVADAV++  PK
Sbjct:  569 LRWLIDEGAQ-RTESELPEIQHLITEMSPVPDIDTSGIHAFEELYKTLQKREVQLILANPGPVVIEKLHASKLTELIGEDKIFLTVADAVATYGPK 663          
BLAST of CX300227 vs. ExPASy Swiss-Prot
Match: SUT11_ARATH (Sulfate transporter 1.1 OS=Arabidopsis thaliana GN=SULTR1;1 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 5.231e-27
Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 2
Query:    5 RWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSSRAPKLVEEQ 304
            RW+ +E+E  K     P I+F+I+EMSPVTDIDTSGIH++E L +SLEK+E+QLILANPGPVV++KL+AS F   IGE NIFLTV DAV+  + ++ E+Q
Sbjct:  550 RWVREEQENAKEYG-MPAIRFVIIEMSPVTDIDTSGIHSIEELLKSLEKQEIQLILANPGPVVIEKLYASKFVEEIGEKNIFLTVGDAVAVCSTEVAEQQ 648          
BLAST of CX300227 vs. ExPASy Swiss-Prot
Match: SUT32_ARATH (Sulfate transporter 3.2 OS=Arabidopsis thaliana GN=SULTR3;2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.155e-16
Identity = 40/91 (43.96%), Postives = 69/91 (75.82%), Query Frame = 2
Query:    5 RWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSS 277
            RW+++EE++++ +     +Q+++++MS V +IDTSGI  LE L++ L +RE++L++ANPG  VM KL  S+F   IG++ I+LTVA+AV++
Sbjct:  537 RWIDEEEDKLRTSG-DISLQYIVLDMSAVGNIDTSGISMLEELNKILGRRELKLVIANPGAEVMKKLSKSTFIESIGKERIYLTVAEAVAA 626          
BLAST of CX300227 vs. ExPASy Swiss-Prot
Match: SUT3_STYHA (Low affinity sulfate transporter 3 OS=Stylosanthes hamata GN=ST3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.087e-16
Identity = 40/92 (43.48%), Postives = 64/92 (69.57%), Query Frame = 2
Query:    2 LRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVSS 277
            L+W+EDEE++      + R+Q +I++M+ +T++DTSGI ALE LH+ L  R V+L + NP   V+ KL  ++F   IG++ +FLTVA+AV +
Sbjct:  543 LKWVEDEEQDNIEEAAKGRVQAIIIDMTDLTNVDTSGILALEELHKKLLSRGVELAMVNPRWEVIHKLKVANFVDKIGKERVFLTVAEAVDA 634          
BLAST of CX300227 vs. ExPASy Swiss-Prot
Match: SUT34_ARATH (Probable sulfate transporter 3.4 OS=Arabidopsis thaliana GN=SULTR3;4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.251e-12
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 2
Query:    2 LRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFTSLIGEDNIFLTVADAVS 274
            LRW  +EE  +K       ++ +I++M+ V+ IDTSG+ A+  L R LEK+ +QL+L NP   VM+KLH S     +G   ++LTV +AV+
Sbjct:  552 LRWAREEENRIKENN-GTTLKCIILDMTAVSAIDTSGLEAVFELRRRLEKQSLQLVLVNPVGTVMEKLHKSKIIEALGLSGLYLTVGEAVA 641          
BLAST of CX300227 vs. ExPASy Swiss-Prot
Match: SUT31_ARATH (Sulfate transporter 3.1 OS=Arabidopsis thaliana GN=SULTR3;1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 35/93 (37.63%), Postives = 64/93 (68.82%), Query Frame = 2
Query:    2 LRWLEDEEEEVKAATYQPRIQFLIVEMSPVTDIDTSGIHALEGLHRSLEKREVQLILANPGPVVMDKLHASSFT-SLIGEDNIFLTVADAVSS 277
            +RW+++EEE VK +  +  +Q++I++MS V +IDTSGI  +  + + +++R ++L+L+NP   V+ KL  S F    +G++ +FLTV +AV +
Sbjct:  545 IRWIDEEEERVKQSG-ESSLQYIILDMSAVGNIDTSGISMMVEIKKVIDRRALKLVLSNPKGEVVKKLTRSKFIGDHLGKEWMFLTVGEAVEA 636          
The following BLAST results are available for this feature:
BLAST of CX300227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SUT12_ARATH2.193e-3369.70Sulfate transporter 1.2 OS=Arabidopsis thaliana GN... [more]
SUT13_ARATH1.088e-3270.71Sulfate transporter 1.3 OS=Arabidopsis thaliana GN... [more]
SUT2_STYHA5.589e-2967.71High affinity sulfate transporter 2 OS=Stylosanthe... [more]
SUT1_STYHA1.245e-2867.71High affinity sulfate transporter 1 OS=Stylosanthe... [more]
SUT11_ARATH5.231e-2760.00Sulfate transporter 1.1 OS=Arabidopsis thaliana GN... [more]
SUT32_ARATH4.155e-1643.96Sulfate transporter 3.2 OS=Arabidopsis thaliana GN... [more]
SUT3_STYHA7.087e-1643.48Low affinity sulfate transporter 3 OS=Stylosanthes... [more]
SUT34_ARATH1.251e-1240.66Probable sulfate transporter 3.4 OS=Arabidopsis th... [more]
SUT31_ARATH4.024e-1137.63Sulfate transporter 3.1 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionC07007F09SK SaltLeaf1 Citrus clementina cDNA clone C07007F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300227 ID=CX300227; Name=CX300227; organism=Citrus clementina; type=EST; length=494bp
ATTGAGATGGTTGGAAGATGAAGAAGAAGAAGTAAAAGCTGCTACCTATC
AACCAAGAATACAGTTTTTAATTGTTGAGATGTCACCTGTTACCGATATC
GACACCAGTGGCATCCATGCCTTGGAAGGGTTACACAGGAGTCTCGAGAA
GAGAGAGGTTCAGCTTATCTTGGCAAATCCAGGCCCAGTGGTAATGGACA
AGCTTCACGCCTCGAGTTTTACAAGCTTGATCGGCGAGGACAATATCTTC
CTCACAGTTGCAGATGCAGTGTCATCCCGCGCCCCAAAACTAGTTGAAGA
ACAACCTTGACGCAAAGAAACTCAAACAATAATAAGCCCATTTTTTGAGA
GAAATGAGCCAAAGCCACCCATGTGCTACATAATCCACCATTTAACGCAT
ATGGTGGAGGGTCTCAATAATGCGGCAGGGGGTAAGTGGAGTGGTTAGTG
TCTGTGACAACTTTTAACTTCACTTCAAGTTACTACGTAAATCC
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