CX300233

Overview
NameCX300233
Unique NameCX300233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8357 contig Ccv1_Contig8357:1065..1477. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300233 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.750e-28
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 1 
Query:    1 GSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 183
            GSP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLADPGHAT+FAAF+PK
Sbjct:  210 GSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFSPK 270
[Close]
BLAST of CX300233 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.750e-28
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 1 
Query:    1 GSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAAFTPK 183
            GSP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLADPGHAT+FAAF+PK
Sbjct:  210 GSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFSPK 270
[Close]
BLAST of CX300233 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.498e-11
Identity = 35/61 (57.38%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    7 PEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLADPGHATVFAA---FTP 180
            P+   EL+ KEIKNGRLAM +  G + Q I TG GPI NL  HLADPG    FAA   FTP
Sbjct:  194 PDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254
[Close]
BLAST of CX300233 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.792e-11
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    7 PEKVKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLIAHLADPGHATVFAAFTPK 183
            P K +EL+ KEIKNGRLA+LA++G   Q   Y GTGP++NL  HLADP H  +     PK
Sbjct:  182 PAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVIIPK 241
The following BLAST results are available for this feature:
BLAST of CX300233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CB12_SOLLC6.750e-2891.80Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY6.750e-2891.80Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_CHLMO7.498e-1157.38Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB11_SOLLC9.792e-1153.33Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionC07007G03SK SaltLeaf1 Citrus clementina cDNA clone C07007G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300233 ID=CX300233; Name=CX300233; organism=Citrus clementina; type=EST; length=413bp
GGTTCGCCCGAGAAGGTAAAGGAGCTGAGGACTAAGGAGATCAAGAATGG
AAGATTGGCTATGTTGGCTGTGATGGGTGCTTGGTTCCAGCACATTTACA
CCGGCACCGGCCCCATTGACAATCTCATTGCCCACCTTGCTGATCCTGGT
CATGCCACCGTTTTTGCTGCCTTCACCCCCAAGTGAGATGATGACGAGCA
AAGGGAGAGAAATTTGGGCCAAGAGGAAGCTTGAGATCAAAGGAATTGGT
GTTTCTCTTAGGGAAAGGTTGTATGATTAGAACTTGTATTAATTGCCTCT
ATCTATGTACAAAGACTTGTGTGATCACTTAGATGCCATGAATATAAAAA
ATATTCAGGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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