CX300244

Overview
NameCX300244
Unique NameCX300244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11911 contig Ccv1_Contig11911:536..1098. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300244 vs. ExPASy Swiss-Prot
Match: NC2B_ARATH (Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.600e-39
Identity = 85/129 (65.89%), Postives = 95/129 (73.64%), Query Frame = 1
Query:    1 KIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETM-DSLKGGKWSNGXXXXXXXXXXXXXXXXXXXXXXXNGGAAGP-PKQPD 381
            KIIKEMLP DVRVARDAQDLLIECCVEFINLVSSESN+VC++EDKRTIAPEHVLKAL+VLGFGEYIEEVYAAYEQHK ETM D+ +  KW+ G                       NGG + P P+ P+
Sbjct:   23 KIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPGAQMTEEEAAAEQQRMFAEARARMNGGVSVPQPEHPE 151          
BLAST of CX300244 vs. ExPASy Swiss-Prot
Match: NC2B_DICDI (Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.579e-24
Identity = 49/88 (55.68%), Postives = 67/88 (76.14%), Query Frame = 1
Query:    1 KIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMDSLKGGK 264
            K+IKEMLP DV+ + + +DL++ECCVEFI+L+SSE+N++C RE KRTIA EHV+KAL  LGF +Y ++V   Y++HKLE     K  K
Sbjct:   20 KLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQKRTIAAEHVIKALTELGFSDYTQKVSDVYDKHKLEVSTKSKSSK 107          
BLAST of CX300244 vs. ExPASy Swiss-Prot
Match: NC2B_RAT (Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.337e-20
Identity = 44/77 (57.14%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    1 KIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 231
            K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K
Sbjct:   20 KMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95          
BLAST of CX300244 vs. ExPASy Swiss-Prot
Match: NC2B_MOUSE (Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.337e-20
Identity = 44/77 (57.14%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    1 KIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 231
            K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K
Sbjct:   20 KMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95          
BLAST of CX300244 vs. ExPASy Swiss-Prot
Match: NC2B_HUMAN (Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.337e-20
Identity = 44/77 (57.14%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    1 KIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 231
            K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K
Sbjct:   20 KMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95          
BLAST of CX300244 vs. ExPASy Swiss-Prot
Match: NC2B_CHICK (Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.337e-20
Identity = 44/77 (57.14%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    1 KIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 231
            K+IKE LP +VRVA DA++L++ CC EFI+L+SSE+NE+C++ +K+TI+PEHV++ALE LGFG YI EV    ++ K
Sbjct:   20 KMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95          
BLAST of CX300244 vs. ExPASy Swiss-Prot
Match: NC2B_SCHPO (Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces pombe GN=ncb2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.857e-19
Identity = 43/77 (55.84%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 KIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 231
            K++ ++LP D+   ++A+DLLIECCVEFI+LVSSE+NE+C +E K+TIA EH++KALE L F EYI E      +HK
Sbjct:   19 KMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAAEHIIKALENLEFKEYIAEALEVAAEHK 95          
BLAST of CX300244 vs. ExPASy Swiss-Prot
Match: NC2B_DROME (Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.304e-16
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 KIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 231
            KIIKE++P  VRVA ++++L++ CC EFI+L+SSE+NEVC+  +K+TI  EHVL+ALE LGF +Y +E  A     K
Sbjct:   27 KIIKELVPT-VRVANESRELILNCCSEFIHLISSEANEVCNMRNKKTINAEHVLEALERLGFHDYKQEAEAVLHDCK 102          
BLAST of CX300244 vs. ExPASy Swiss-Prot
Match: NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.862e-11
Identity = 36/90 (40.00%), Postives = 62/90 (68.89%), Query Frame = 1
Query:    1 KIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE--EVY-AAYEQHKLETMDSLKGG 261
            +I+K  LPA+ ++A+DA++++ EC  EFI+ V+SE+++ C RE ++TI  + +L A+  LGF +Y+E  +VY   Y + + +T  S KGG
Sbjct:   42 RIMKRGLPANGKIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKGG 131          
BLAST of CX300244 vs. ExPASy Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.417e-11
Identity = 32/92 (34.78%), Postives = 61/92 (66.30%), Query Frame = 1
Query:    1 KIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMDSLKGGKWSNG 276
            +I+K+ +PA+ ++A+DA++ + EC  EFI+ ++SE+++ C RE ++TI  + +L A+  LGF +YIE +    ++++    DS    K S+G
Sbjct:   43 RIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSDG 134          
The following BLAST results are available for this feature:
BLAST of CX300244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NC2B_ARATH3.600e-3965.89Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1... [more]
NC2B_DICDI5.579e-2455.68Protein Dr1 homolog OS=Dictyostelium discoideum GN... [more]
NC2B_RAT8.337e-2057.14Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1[more]
NC2B_MOUSE8.337e-2057.14Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1[more]
NC2B_HUMAN8.337e-2057.14Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1[more]
NC2B_CHICK8.337e-2057.14Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1[more]
NC2B_SCHPO1.857e-1955.84Negative cofactor 2 complex subunit beta OS=Schizo... [more]
NC2B_DROME7.304e-1653.25Protein Dr1 OS=Drosophila melanogaster GN=NC2beta ... [more]
NFYB8_ARATH1.862e-1140.00Nuclear transcription factor Y subunit B-8 OS=Arab... [more]
NFYB_MAIZE5.417e-1134.78Nuclear transcription factor Y subunit B OS=Zea ma... [more]

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Properties
Property NameValue
Genbank descriptionC07007H02SK SaltLeaf1 Citrus clementina cDNA clone C07007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300244 ID=CX300244; Name=CX300244; organism=Citrus clementina; type=EST; length=559bp
AAAATTATAAAAGAGATGTTGCCAGCAGATGTACGTGTTGCAAGAGATGC
TCAAGATCTTTTGATTGAGTGTTGTGTAGAGTTTATAAATCTTGTTTCCT
CTGAGTCCAATGAAGTTTGCAGCAGGGAGGATAAAAGAACAATTGCTCCC
GAGCATGTACTCAAGGCTTTGGAGGTTCTTGGGTTTGGTGAGTACATCGA
GGAGGTCTATGCTGCATACGAGCAACACAAGCTTGAGACTATGGACTCGT
TGAAAGGTGGCAAATGGAGCAATGGGGCCGAGATGACGGAGGAAGAAGCA
GCGGCTGAGCAGCAGAGAATGTTTGCTGAGGCACGTGCACGAATGAACGG
TGGAGCCGCTGGCCCTCCCAAGCAACCGGACATTAACCCAAGTTTAGAGA
GCTAACTAACTATAGGACTTTTAATTTTCTCCAGCCATAGGCAAGCATCC
TTGACTCTTTCTGTTCTGCCTTTAGTCTCTTATATTATGTACAAAAAGCC
TTTGTGAGTGCAGTAGCCTATGTGGATATGCACTTCCATTTGTACTTTAT
CTTATGGAT
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