CX300246

Overview
NameCX300246
Unique NameCX300246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14114 contig Ccv1_Contig14114:1052..1557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300246 vs. ExPASy Swiss-Prot
Match: ALFC2_ARATH (Probable fructose-bisphosphate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=FBA2 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.286e-39
Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 2
Query:    2 ATLNLNAMNQGPNPWHVSFSYARALQNTCLKTWGGRPENVKAAQDTLLTRAKANSLAQLGKYTGEGESEEAKKGMFVKGYTY 247
            ATLNLNAMNQ PNPWHVSFSYARALQNTCLKTWGGRPENV AAQ TLL RAKANSLAQLGKYTGEGESEEAK+GMFVKGYTY
Sbjct:  317 ATLNLNAMNQAPNPWHVSFSYARALQNTCLKTWGGRPENVNAAQTTLLARAKANSLAQLGKYTGEGESEEAKEGMFVKGYTY 398          
BLAST of CX300246 vs. ExPASy Swiss-Prot
Match: ALFC1_ARATH (Probable fructose-bisphosphate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=FBA1 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 4.888e-39
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 2
Query:    2 ATLNLNAMNQGPNPWHVSFSYARALQNTCLKTWGGRPENVKAAQDTLLTRAKANSLAQLGKYTGEGESEEAKKGMFVKGYTY 247
            ATLNLNAMNQ PNPWHVSFSYARALQNTCLKTWGG+ ENVKAAQD LL RAKANSLAQLGKYTGEGESEEAK+GMFVKGYTY
Sbjct:  318 ATLNLNAMNQAPNPWHVSFSYARALQNTCLKTWGGKEENVKAAQDILLARAKANSLAQLGKYTGEGESEEAKEGMFVKGYTY 399          
BLAST of CX300246 vs. ExPASy Swiss-Prot
Match: ALFC_ORYSJ (Fructose-bisphosphate aldolase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os11g0171300 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.738e-36
Identity = 71/82 (86.59%), Postives = 75/82 (91.46%), Query Frame = 2
Query:    2 ATLNLNAMNQGPNPWHVSFSYARALQNTCLKTWGGRPENVKAAQDTLLTRAKANSLAQLGKYTGEGESEEAKKGMFVKGYTY 247
            AT NLNAMNQGPNPWHVSFSYARALQNTCLKTWGG+PENVKAAQD LL RAKANSLAQLGKYT +GE+ EAK+GMFVK Y Y
Sbjct:  307 ATQNLNAMNQGPNPWHVSFSYARALQNTCLKTWGGQPENVKAAQDALLLRAKANSLAQLGKYTSDGEAAEAKEGMFVKNYVY 388          
BLAST of CX300246 vs. ExPASy Swiss-Prot
Match: ALFC1_PEA (Fructose-bisphosphate aldolase 1, chloroplastic (Fragment) OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.246e-34
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 2
Query:    2 ATLNLNAMNQGPNPWHVSFSYARALQNTCLKTWGGRPENVKAAQDTLLTRAKANSLAQLGKYTGEGESEEAKKGMFVKGYTY 247
            ATLNLNAMN+ PNPWHVSFSYARALQNT LKTWGG PENVKAAQ+ LL RAK+NSLAQLGKY G+GESEEAKK +FVKGY+Y
Sbjct:  275 ATLNLNAMNKSPNPWHVSFSYARALQNTALKTWGGLPENVKAAQEALLFRAKSNSLAQLGKYYGDGESEEAKKELFVKGYSY 356          
BLAST of CX300246 vs. ExPASy Swiss-Prot
Match: ALFC3_ARATH (Probable fructose-bisphosphate aldolase 3, chloroplastic OS=Arabidopsis thaliana GN=FBA3 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.349e-33
Identity = 65/82 (79.27%), Postives = 74/82 (90.24%), Query Frame = 2
Query:    2 ATLNLNAMNQGPNPWHVSFSYARALQNTCLKTWGGRPENVKAAQDTLLTRAKANSLAQLGKYTGEGESEEAKKGMFVKGYTY 247
            ATLNLNAMNQ PNPWHVSFSYARALQN+ L+TW G+PE ++A+Q  LL RAKANSLAQLGKY+ EGE+E+AKKGMFVKGYTY
Sbjct:  310 ATLNLNAMNQSPNPWHVSFSYARALQNSVLRTWQGKPEKIEASQKALLVRAKANSLAQLGKYSAEGENEDAKKGMFVKGYTY 391          
BLAST of CX300246 vs. ExPASy Swiss-Prot
Match: ALFC2_PEA (Fructose-bisphosphate aldolase 2, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 2.199e-31
Identity = 66/82 (80.49%), Postives = 72/82 (87.80%), Query Frame = 2
Query:    2 ATLNLNAMNQGPNPWHVSFSYARALQNTCLKTWGGRPENVKAAQDTLLTRAKANSLAQLGKYTGEGESEEAKKGMFVKGYTY 247
            ATLNLNAMN+ PNPWHVSFSYARALQNT LKTWGG PENVKAAQ+ LL RAK+NSLAQLGKY G+GESEEAKK    +GY+Y
Sbjct:  269 ATLNLNAMNKSPNPWHVSFSYARALQNTALKTWGGLPENVKAAQEALLFRAKSNSLAQLGKYIGDGESEEAKKDC-CQGYSY 349          
BLAST of CX300246 vs. ExPASy Swiss-Prot
Match: ALFC_SPIOL (Fructose-bisphosphate aldolase, chloroplastic OS=Spinacia oleracea PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 2.516e-27
Identity = 64/78 (82.05%), Postives = 65/78 (83.33%), Query Frame = 2
Query:    2 ATLNLNAMNQGPNPWHVSFSYARALQNTCLKTWGGRPENVKAAQDTLLTRAKANSLAQLGKYTGEGESEEAKKGMFVK 235
            ATLNLNAMNQ PNPWHVSFSYARALQNTCLKTW    ENVK AQD     AK+NSLAQLGKYTGEGESEE KK MFVK
Sbjct:  315 ATLNLNAMNQSPNPWHVSFSYARALQNTCLKTWVEGQENVK-AQD--FACAKSNSLAQLGKYTGEGESEERKKDMFVK 389          
BLAST of CX300246 vs. ExPASy Swiss-Prot
Match: ALFC_CHLRE (Fructose-bisphosphate aldolase 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALDCHL PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.132e-19
Identity = 50/82 (60.98%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    2 ATLNLNAMNQGPNPWHVSFSYARALQNTCLKTWGGRPENVKAAQDTLLTRAKANSLAQLGKYTGEGESEEAKKGMFVKGYTY 247
            +TLNLNAMNQ PNPWHVSFSYARAL NT LKTW   P  V+A +     R KANS AQ GKY    E +EA +GM+ KG  Y
Sbjct:  292 STLNLNAMNQSPNPWHVSFSYARALTNTVLKTWQASPRTVQAPRLAAQAR-KANSDAQQGKYDATTEGKEAAQGMYEKGKGY 372          
BLAST of CX300246 vs. ExPASy Swiss-Prot
Match: ALF_DICDI (Fructose-bisphosphate aldolase OS=Dictyostelium discoideum GN=fba PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.618e-19
Identity = 48/83 (57.83%), Postives = 57/83 (68.67%), Query Frame = 2
Query:    2 ATLNLNAMNQGPN-PWHVSFSYARALQNTCLKTWGGRPENVKAAQDTLLTRAKANSLAQLGKYTGEGESEEAKKGMFVKGYTY 247
            AT NLNAMN  PN PW +SFSY RALQ + + TW G   NV+AA+   L RAK NSLAQLGKYTGE  +  A + ++VK Y Y
Sbjct:  275 ATANLNAMNVLPNRPWALSFSYGRALQASVISTWKGESANVEAARKVYLHRAKCNSLAQLGKYTGEESTGSASESLYVKDYKY 357          
BLAST of CX300246 vs. ExPASy Swiss-Prot
Match: ALF_CICAR (Fructose-bisphosphate aldolase, cytoplasmic isozyme OS=Cicer arietinum GN=ALDC PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.252e-18
Identity = 49/85 (57.65%), Postives = 58/85 (68.24%), Query Frame = 2
Query:    2 ATLNLNAMNQ--GPNPWHVSFSYARALQNTCLKTWGGRPENVKAAQDTLLTRAKANSLAQLGKYTGEGE-SEEAKKGMFVKGYTY 247
            AT+NLNA+NQ  G  PW +SFS+ RALQ + LK W G+ ENVK AQD LLTRAKANS A LG Y G  +  E A + + VK Y Y
Sbjct:  275 ATVNLNAINQVKGKKPWTLSFSFGRALQQSTLKAWSGKEENVKNAQDALLTRAKANSEATLGTYKGNSQLGEGASESLHVKDYKY 359          
The following BLAST results are available for this feature:
BLAST of CX300246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
ALFC2_ARATH1.286e-3993.90Probable fructose-bisphosphate aldolase 2, chlorop... [more]
ALFC1_ARATH4.888e-3992.68Probable fructose-bisphosphate aldolase 1, chlorop... [more]
ALFC_ORYSJ1.738e-3686.59Fructose-bisphosphate aldolase, chloroplastic OS=O... [more]
ALFC1_PEA1.246e-3484.15Fructose-bisphosphate aldolase 1, chloroplastic (F... [more]
ALFC3_ARATH2.349e-3379.27Probable fructose-bisphosphate aldolase 3, chlorop... [more]
ALFC2_PEA2.199e-3180.49Fructose-bisphosphate aldolase 2, chloroplastic OS... [more]
ALFC_SPIOL2.516e-2782.05Fructose-bisphosphate aldolase, chloroplastic OS=S... [more]
ALFC_CHLRE1.132e-1960.98Fructose-bisphosphate aldolase 1, chloroplastic OS... [more]
ALF_DICDI5.618e-1957.83Fructose-bisphosphate aldolase OS=Dictyostelium di... [more]
ALF_CICAR1.252e-1857.65Fructose-bisphosphate aldolase, cytoplasmic isozym... [more]

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Properties
Property NameValue
Genbank descriptionC07007H04SK SaltLeaf1 Citrus clementina cDNA clone C07007H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300246 ID=CX300246; Name=CX300246; organism=Citrus clementina; type=EST; length=506bp
GGCAACCCTCAACTTGAACGCCATGAACCAAGGTCCCAACCCATGGCACG
TATCTTTCTCTTATGCCAGAGCTCTCCAAAACACCTGCCTGAAGACATGG
GGTGGCAGGCCAGAGAATGTCAAGGCAGCTCAGGATACTCTGCTCACCCG
TGCCAAGGCCAACTCACTTGCTCAGCTCGGCAAGTACACTGGCGAGGGAG
AATCAGAGGAGGCCAAGAAAGGAATGTTCGTCAAGGGATACACCTACTAA
ATTTGTTAGCACGAAGATCATAAGAATGGTGAAGAAATTTGAAATGAGTA
GTCATCTCAAATGTGTTAATGCTTTATAGCCGTGCTTTGGAGACTATTTT
TGTTCATGATTACATGTACTTTTAGCAACTTAATAAACTTCTTGCCAATG
AGATGAGTTAGTGTGTATTTATGATGAGATTAAGTTCTCTGTACTTTTAT
GTGCATCGTATCTTATACTGCTTTAGTTTACAGTCCAAAAAAAAAAAAAA
AAAAAA
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