CX300247

Overview
NameCX300247
Unique NameCX300247
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length416
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15011 contig Ccv1_Contig15011:83..498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: FLS_CITUN (Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.068e-41
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ 239
            +IHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ
Sbjct:  257 VIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ 335          
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: FLS_EUSGR (Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma grandiflorum GN=FLS PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.399e-33
Identity = 61/79 (77.22%), Postives = 73/79 (92.41%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ 239
            I+HIGDQ+EI+SNGKYK+V HRTTVNK+KTRMSWPVFLEPP D  VGP+P+LV++ENP K+K KK+KDY+YCKLNKLPQ
Sbjct:  256 IVHIGDQVEIMSNGKYKSVYHRTTVNKEKTRMSWPVFLEPPPDHEVGPIPKLVNEENPAKFKTKKYKDYAYCKLNKLPQ 334          
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: FLS_PETHY (Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.827e-33
Identity = 61/79 (77.22%), Postives = 72/79 (91.14%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ 239
            I+HIGDQ+EILSNGKYK+V HRTTVNKDKTRMSWPVFLEPP++  VGP+P+L+ + NPPK+K KK+KDY YCKLNKLPQ
Sbjct:  270 IVHIGDQVEILSNGKYKSVYHRTTVNKDKTRMSWPVFLEPPSEHEVGPIPKLLSEANPPKFKTKKYKDYVYCKLNKLPQ 348          
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: FLS_PETCR (Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.184e-32
Identity = 61/79 (77.22%), Postives = 70/79 (88.61%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ 239
            IIHIGDQIEI+SNGKYK+V HRTTVNKDKTRMSWPVFLEPP + + GP+ +L+ DENP K+K KK+KDY YCKLNKLPQ
Sbjct:  259 IIHIGDQIEIMSNGKYKSVYHRTTVNKDKTRMSWPVFLEPPPELLTGPISKLITDENPAKFKTKKYKDYVYCKLNKLPQ 337          
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: FLS_MALDO (Flavonol synthase/flavanone 3-hydroxylase OS=Malus domestica GN=FLS PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.445e-32
Identity = 62/79 (78.48%), Postives = 70/79 (88.61%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ 239
            +IHIGDQ+EI+SNGKY +VLHRTTVNKDKTR+SWPVFLEPPAD VVGP PQLV+  N PKYK KK+ DY YCK+NKLPQ
Sbjct:  259 VIHIGDQMEIMSNGKYTSVLHRTTVNKDKTRISWPVFLEPPADHVVGPHPQLVNAVNQPKYKTKKYGDYVYCKINKLPQ 337          
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: FLS_SOLTU (Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.002e-31
Identity = 59/79 (74.68%), Postives = 70/79 (88.61%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ 239
            I+HIGDQ+EILSNGKYK+V HRTTVNK KTRMSWPVFLEP ++  VGP+P L+++ NPPK+K KK+KDY YCKLNKLPQ
Sbjct:  271 IVHIGDQVEILSNGKYKSVYHRTTVNKYKTRMSWPVFLEPSSEHEVGPIPNLINEANPPKFKTKKYKDYVYCKLNKLPQ 349          
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: FLS1_ARATH (Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.090e-29
Identity = 58/78 (74.36%), Postives = 67/78 (85.90%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLP 236
            I+HIGDQI  LSNG+YK VLHRTTV+K+KTRMSWPVFLEPP + +VGPLP+L  D+NPPK+K   FKDYSY KLNKLP
Sbjct:  257 IVHIGDQILRLSNGRYKNVLHRTTVDKEKTRMSWPVFLEPPREKIVGPLPELTGDDNPPKFKPFAFKDYSYRKLNKLP 334          
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: FLS_MATIN (Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.200e-22
Identity = 46/77 (59.74%), Postives = 61/77 (79.22%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLNKL 233
            I++IGDQI +LSNGKYK VLH+TTV+K+KTRMSWPV + P  D VVGPLP+L  +++PPK+K   +KDY + K+  L
Sbjct:  211 IVNIGDQIMMLSNGKYKNVLHKTTVDKEKTRMSWPVLVSPTYDMVVGPLPELTSEDDPPKFKPIAYKDYVHNKITFL 287          
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.088e-17
Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVV-GPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ*IFHYEKNN 266
            ++HIGD +EILSNGKYK++LHR  VNK+K R+SW VF EPP D +V  PLP++V  E+P K+  + F  +   KL    Q     EKN+
Sbjct:  268 VMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEELVSEKND 356          
BLAST of CX300247 vs. ExPASy Swiss-Prot
Match: LDOX_PETHY (Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.554e-16
Identity = 38/75 (50.67%), Postives = 52/75 (69.33%), Query Frame = 3
Query:    3 IIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVV-GPLPQLVDDENPPKYKAKKFKDYSYCKL 224
            I+HIGD IEILSNGKYK++LHR  VNK+K R SW +F EPP + ++  PLP+ V +  PP++  + F  +   KL
Sbjct:  272 IMHIGDTIEILSNGKYKSILHRGVVNKEKVRFSWAIFCEPPKEKIILKPLPETVTEAEPPRFPPRTFAQHMAHKL 346          
The following BLAST results are available for this feature:
BLAST of CX300247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
FLS_CITUN1.068e-4198.73Flavonol synthase/flavanone 3-hydroxylase OS=Citru... [more]
FLS_EUSGR1.399e-3377.22Flavonol synthase/flavanone 3-hydroxylase OS=Eusto... [more]
FLS_PETHY1.827e-3377.22Flavonol synthase/flavanone 3-hydroxylase OS=Petun... [more]
FLS_PETCR1.184e-3277.22Flavonol synthase/flavanone 3-hydroxylase OS=Petro... [more]
FLS_MALDO3.445e-3278.48Flavonol synthase/flavanone 3-hydroxylase OS=Malus... [more]
FLS_SOLTU1.002e-3174.68Flavonol synthase/flavanone 3-hydroxylase OS=Solan... [more]
FLS1_ARATH2.090e-2974.36Flavonol synthase/flavanone 3-hydroxylase OS=Arabi... [more]
FLS_MATIN7.200e-2259.74Flavonol synthase/flavanone 3-hydroxylase (Fragmen... [more]
LDOX_ARATH4.088e-1749.44Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
LDOX_PETHY1.554e-1650.67Leucoanthocyanidin dioxygenase OS=Petunia hybrida ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07007H05SK SaltLeaf1 Citrus clementina cDNA clone C07007H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300247 ID=CX300247; Name=CX300247; organism=Citrus clementina; type=EST; length=416bp
TCATCATCCACATCGGGGACCAGATCGAGATTCTGAGCAATGGCAAGTAC
AAAGCCGTGCTGCATAGAACCACTGTTAACAAGGACAAGACGAGAATGTC
GTGGCCAGTTTTCTTGGAGCCACCTGCGGATACGGTGGTGGGTCCCCTTC
CTCAGCTGGTTGACGATGAAAATCCTCCAAAGTACAAGGCCAAGAAGTTC
AAGGATTACAGTTACTGTAAACTTAACAAACTTCCTCAGTAGATTTTTCA
TTATGAGAAAAATAACACCAGTATCCGCTGGCCGCTCATGTTTGATCTCG
TCACTGTACGTTAGCGATGCTTGTTTGTTGTTGCGATCTTGTTTCTGAAA
TGTAATCGCGGGTGTTAGCAATAATAAATAATCCTTTCATTTTATTTAAA
AAAAAAAAAAAAAAAA
back to top