CX300248

Overview
NameCX300248
Unique NameCX300248
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300248_ssr467 microsatellite CX300248_ssr467:467..478. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX300248 vs. ExPASy Swiss-Prot
Match: FBK28_ARATH (F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.157e-49
Identity = 90/148 (60.81%), Postives = 116/148 (78.38%), Query Frame = 1
Query:    1 GCFACSFDGKLYVMGGRSSFTIVNSKFVDVYNPERHTWCQMKNGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMEPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTFKIKPSGLCLCSVTIKA 444
            GCFA +F+GKLYVMGGRS+FTI NSK +DVYN +  +W   KNG  MVTAH  VGKKLFC++WKN RK+++F+ ED +W++  +PL+GSS  GF+FG L GKLLLFS +EE    TLLYDP+A+ G++W+T +IK SG C+CSVTI A
Sbjct:  229 GCFASAFNGKLYVMGGRSNFTIGNSKLLDVYNTQCGSWHGSKNGLTMVTAHVEVGKKLFCIDWKNHRKMSVFNAEDETWEVVALPLSGSSRAGFQFGKLSGKLLLFSSQEETGQCTLLYDPDASPGTQWKTSEIKLSGSCVCSVTITA 376          
BLAST of CX300248 vs. ExPASy Swiss-Prot
Match: FBK16_ARATH (Putative F-box/kelch-repeat protein At1g27420 OS=Arabidopsis thaliana GN=At1g27420 PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.283e-15
Identity = 55/153 (35.95%), Postives = 83/153 (54.25%), Query Frame = 1
Query:    7 FACSFDGKLYVMGGRS------SFTIVN-SKFVDVYNPERHTWCQMKNG-CVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMEPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTF-KIKPSGLCLCSVTI 438
            FA +F  KLY +G R         T+ N S+F+D+Y+P+  TW ++ +   V V ++ VV  K++ M+     +L +FDPE+NSW    VP         R G+ + K+LLFS      + TL+YD +   GS+W+   +IKPS   L SV I
Sbjct:  209 FAFAFSSKLYAVGRRQWNHIRFQGTLGNGSRFIDIYDPKTQTWEELNSEQSVSVYSYTVVRNKVYFMDRNMPGRLGVFDPEENSWSSVFVP-PREGGFWVRLGVWNNKVLLFS--RVCGHETLMYDLDKEKGSKWRVCDQIKPSASQLASVLI 358          
The following BLAST results are available for this feature:
BLAST of CX300248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FBK28_ARATH3.157e-4960.81F-box/kelch-repeat protein At1g67480 OS=Arabidopsi... [more]
FBK16_ARATH2.283e-1535.95Putative F-box/kelch-repeat protein At1g27420 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionC07007H06SK SaltLeaf1 Citrus clementina cDNA clone C07007H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300248 ID=CX300248; Name=CX300248; organism=Citrus clementina; type=EST; length=581bp
GGTTGTTTTGCTTGCAGCTTTGATGGAAAACTTTACGTCATGGGTGGGAG
GTCGAGCTTCACCATTGTAAATTCAAAATTTGTTGATGTGTACAATCCTG
AGAGGCACACCTGGTGTCAGATGAAGAATGGTTGTGTAATGGTCACTGCT
CATGCTGTGGTTGGGAAGAAGCTCTTCTGTATGGAATGGAAGAACCAGAG
GAAACTGACCATATTCGATCCAGAGGACAATTCATGGAAGATGGAGCCAG
TTCCCTTGACTGGTAGCTCATCCATTGGATTCCGATTTGGGATATTGGAC
GGAAAACTTTTACTTTTCTCGCTAGAAGAAGAACCAAGTTATAGCACATT
GTTGTATGATCCAAATGCGGCCTCTGGCTCTGAATGGCAGACCTTCAAGA
TAAAGCCTTCGGGCTTGTGCTTGTGCAGTGTGACAATCAAAGCATGAACA
AAAAGTTGCATTGCCCGCCAGCCAGCCAGTTGAAGAACCTTCTCTTCATT
GAATAATATTATTGATTGACCACTCTGTTTGATGATCTTTTATAACTCTA
CTTAATCTCTGCATTTGACATTAATTTTCTT
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