CX300252

Overview
NameCX300252
Unique NameCX300252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length332
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13924 contig Ccv1_Contig13924:432..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPE1_SOLLC (Arginine decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 3.814e-47
Identity = 83/109 (76.15%), Postives = 98/109 (89.91%), Query Frame = 3
Query:    3 ADQLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEM 329
            +DQLKQRC+EQFKDG+L IEQLA VD +CD+V+K IG +DPVRTYHVNLS+FTSIPD+W   QLFPIVPIH LDE+P +RG+LSDLTCDSDGK+DKFIGG +SLPLHE+
Sbjct:  347 SDQLKQRCVEQFKDGSLDIEQLAAVDSICDWVSKAIGVADPVRTYHVNLSVFTSIPDFWGFSQLFPIVPIHRLDEKPTMRGILSDLTCDSDGKVDKFIGGESSLPLHEI 455          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPE1_ARATH (Arginine decarboxylase 1 OS=Arabidopsis thaliana GN=SPE1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 6.506e-47
Identity = 86/108 (79.63%), Postives = 97/108 (89.81%), Query Frame = 3
Query:    6 DQLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEM 329
            DQLKQRC+E FK+G+LGIEQLA VDGLC++V K IGASDPV TYHVNLS+FTSIPD+W I QLFPIVPIH LD+RP  RG+LSDLTCDSDGKI+KFIGG +SLPLHEM
Sbjct:  438 DQLKQRCVEGFKEGSLGIEQLAGVDGLCEWVIKAIGASDPVLTYHVNLSVFTSIPDFWGIDQLFPIVPIHKLDQRPAARGILSDLTCDSDGKINKFIGGESSLPLHEM 545          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPE2_ARATH (Arginine decarboxylase 2 OS=Arabidopsis thaliana GN=SPE2 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.227e-45
Identity = 83/108 (76.85%), Postives = 96/108 (88.89%), Query Frame = 3
Query:    6 DQLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEM 329
            DQLKQRC+E FK+G L IEQLA+VDGLC++V K IGASDPV TY++NLS+FTSIPD W I QLFPIVPIH LD+RPG RG+LSDLTCDSDGKI+KFIGG +SLPLHE+
Sbjct:  451 DQLKQRCVEGFKEGVLSIEQLASVDGLCEWVLKAIGASDPVHTYNINLSVFTSIPDLWGIDQLFPIVPIHKLDQRPGARGILSDLTCDSDGKINKFIGGESSLPLHEL 558          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPE1_PEA (Arginine decarboxylase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.227e-45
Identity = 80/108 (74.07%), Postives = 93/108 (86.11%), Query Frame = 3
Query:    6 DQLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEM 329
            +Q K+RC+E+FK GTLGIEQLA VDGLCD + + IG  DPV+ YHVNLS+FTS+PD+W I QLFPIVPIH LDE+P  RG+LSDLTCDSDGKIDKFIGG +SLPLHEM
Sbjct:  466 EQFKKRCVEEFKQGTLGIEQLAAVDGLCDLITETIGVKDPVKKYHVNLSVFTSVPDFWGINQLFPIVPIHRLDEKPTARGILSDLTCDSDGKIDKFIGGESSLPLHEM 573          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPE1_BRAJU (Arginine decarboxylase OS=Brassica juncea GN=ADC1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 7.953e-45
Identity = 82/108 (75.93%), Postives = 96/108 (88.89%), Query Frame = 3
Query:    6 DQLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEM 329
            DQLKQRC+E+FK+G+L IEQLA VDGLC++V KEIG SDPV TY+VNLS+F SIPD+W I QLFPIVPIH LD+RP  RG+LSDLTCDSDGKI+KFIGG +SLPLHE+
Sbjct:  444 DQLKQRCVEEFKEGSLSIEQLAGVDGLCEWVTKEIGGSDPVLTYNVNLSVFHSIPDFWGIDQLFPIVPIHRLDQRPVARGILSDLTCDSDGKINKFIGGESSLPLHEL 551          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPE1_ORYSJ (Arginine decarboxylase OS=Oryza sativa subsp. japonica GN=ADC1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.270e-42
Identity = 77/109 (70.64%), Postives = 92/109 (84.40%), Query Frame = 3
Query:    3 ADQLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEM 329
            ADQLK+RC +QFKDG LG+E LA VD LC+ VA+ +GA++P RTYH+NLS+FTS+PD WAIGQ+FPI+PI  L ERP V GVLSDLTCDSDGK+D FIGG  SLPLHE+
Sbjct:  453 ADQLKRRCADQFKDGVLGLEHLAAVDSLCEIVARGMGAAEPPRTYHINLSVFTSLPDMWAIGQMFPIIPIQRLGERPAVDGVLSDLTCDSDGKVDHFIGGRHSLPLHEL 561          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPE1_DIACA (Arginine decarboxylase OS=Dianthus caryophyllus GN=ADC PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.694e-42
Identity = 77/106 (72.64%), Postives = 92/106 (86.79%), Query Frame = 3
Query:   12 LKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEM 329
            LKQRC+E FKDG LG+EQLA VDGLC+ V+K +G +D V TY+VNLS+FTSIPD+W IGQLFPI+PIH LD++P  RG+LSDLTCDSDGKIDKFIG  +SLPLHE+
Sbjct:  465 LKQRCVELFKDGCLGMEQLAAVDGLCELVSKALGVADGVCTYNVNLSVFTSIPDFWGIGQLFPIMPIHRLDQQPKARGILSDLTCDSDGKIDKFIGDESSLPLHEL 570          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPE1_SOYBN (Arginine decarboxylase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.825e-42
Identity = 75/108 (69.44%), Postives = 93/108 (86.11%), Query Frame = 3
Query:    6 DQLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEM 329
            +++K+RC+EQFK GT+ +EQLA V+GLC+ V K +GA++ VR YHVNLSIFTS+PD W I Q+FPI+PIH LDE+P VRG+LSDLTCDSDGKIDKFI G +SLPLHEM
Sbjct:  454 EEMKERCVEQFKQGTVCMEQLAAVEGLCELVRKAVGAAESVRRYHVNLSIFTSVPDAWGIEQVFPIIPIHRLDEKPSVRGILSDLTCDSDGKIDKFINGESSLPLHEM 561          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPE2_THECC (Arginine decarboxylase (Fragment) OS=Theobroma cacao GN=SPE2 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.230e-42
Identity = 77/97 (79.38%), Postives = 88/97 (90.72%), Query Frame = 3
Query:    3 ADQLKQRCIEQFKDGTLGIEQLATVDGLCDFVAKEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKF 293
            ADQ KQRC+EQFK+GTLGIEQLA+VDGLC++V K IGASDPV TY++NLS+FTSIPD W I QLFPIVPIH LD+RPG RG+LSDLTCDSDGKI+KF
Sbjct:  310 ADQWKQRCVEQFKEGTLGIEQLASVDGLCEWVLKAIGASDPVHTYNINLSVFTSIPDLWGIDQLFPIVPIHKLDQRPGARGILSDLTCDSDGKINKF 406          
BLAST of CX300252 vs. ExPASy Swiss-Prot
Match: SPEA_ANASP (Biosynthetic arginine decarboxylase OS=Anabaena sp. (strain PCC 7120) GN=speA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.156e-19
Identity = 51/114 (44.74%), Postives = 67/114 (58.77%), Query Frame = 3
Query:    3 ADQLKQRCIEQFKDGTLGIEQLATVDGLC--------------DFVAKEIGASDPVRT--YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFI 296
            A Q K+  I +F  G L + + A  + L               D+V  E+   + +    Y++NLS+F S PD WAI QLFPI+PIH LDE P  RG+L+DLTCDSDGKID+FI
Sbjct:  444 ATQFKEEAISRFNLGILRLRERAKAERLYWACCQKILDIIRQHDYVPDELEDLEKIMASIYYINLSVFQSAPDCWAIDQLFPIMPIHRLDEEPTQRGILADLTCDSDGKIDRFI 557          
The following BLAST results are available for this feature:
BLAST of CX300252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
SPE1_SOLLC3.814e-4776.15Arginine decarboxylase OS=Solanum lycopersicum PE=... [more]
SPE1_ARATH6.506e-4779.63Arginine decarboxylase 1 OS=Arabidopsis thaliana G... [more]
SPE2_ARATH1.227e-4576.85Arginine decarboxylase 2 OS=Arabidopsis thaliana G... [more]
SPE1_PEA1.227e-4574.07Arginine decarboxylase OS=Pisum sativum PE=2 SV=1[more]
SPE1_BRAJU7.953e-4575.93Arginine decarboxylase OS=Brassica juncea GN=ADC1 ... [more]
SPE1_ORYSJ1.270e-4270.64Arginine decarboxylase OS=Oryza sativa subsp. japo... [more]
SPE1_DIACA3.694e-4272.64Arginine decarboxylase OS=Dianthus caryophyllus GN... [more]
SPE1_SOYBN4.825e-4269.44Arginine decarboxylase OS=Glycine max PE=2 SV=1[more]
SPE2_THECC8.230e-4279.38Arginine decarboxylase (Fragment) OS=Theobroma cac... [more]
SPEA_ANASP1.156e-1944.74Biosynthetic arginine decarboxylase OS=Anabaena sp... [more]

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Properties
Property NameValue
Genbank descriptionC07007H10SK SaltLeaf1 Citrus clementina cDNA clone C07007H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300252 ID=CX300252; Name=CX300252; organism=Citrus clementina; type=EST; length=332bp
ATGCTGATCAATTGAAACAAAGATGCATTGAGCAATTTAAGGATGGGACT
TTAGGTATTGAACAGTTAGCTACTGTTGATGGGTTGTGTGATTTTGTAGC
TAAGGAAATAGGTGCATCTGATCCTGTTCGTACTTATCATGTGAATCTAT
CTATTTTCACTTCAATTCCGGATTATTGGGCCATTGGTCAGTTGTTTCCT
ATTGTTCCAATTCATCATTTGGATGAGAGGCCTGGAGTGAGGGGGGTTTT
ATCGGATTTGACTTGTGATAGTGATGGTAAGATTGATAAGTTCATTGGTG
GTGGTACGAGCTTGCCGTTACATGAAATGGTT
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