CX300332

Overview
NameCX300332
Unique NameCX300332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length362
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300332 vs. ExPASy Swiss-Prot
Match: YOG5_SCHPO (COBW domain-containing protein C15D4.05 OS=Schizosaccharomyces pombe GN=SPBC15D4.05 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.006e-31
Identity = 59/114 (51.75%), Postives = 89/114 (78.07%), Query Frame = 1
Query:    1 ILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALIEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNL 342
            IL  ++GKR+AV++NE G+   +ER+++ +  G  L EEWV L+NGC+CCTVK + ++ALE+++++K R D+I++ETTG+ANP PLA   WLDD L+S V+LD I+TV+D KN+
Sbjct:   81 ILENRNGKRVAVLMNEVGDSGDLERSLMEDVGGEELYEEWVALSNGCMCCTVKDNGIKALEKIMRQKGRFDNIVIETTGIANPGPLAQTFWLDDALKSDVKLDGIVTVIDCKNI 194          
BLAST of CX300332 vs. ExPASy Swiss-Prot
Match: CBWD1_HUMAN (COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.229e-29
Identity = 61/112 (54.46%), Postives = 86/112 (76.79%), Query Frame = 1
Query:    1 ILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALIEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 336
            IL  +H KR+AVILNEFGE   +E+++    +GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K + D+ILLETTGLA+P  +AS+ W+D +L S + LD IIT+VD+K
Sbjct:   62 ILTEQHSKRVAVILNEFGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSK 172          
BLAST of CX300332 vs. ExPASy Swiss-Prot
Match: CBWD1_MOUSE (COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.606e-29
Identity = 62/112 (55.36%), Postives = 86/112 (76.79%), Query Frame = 1
Query:    1 ILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALIEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 336
            IL  +H ++IAVILNEFGE   VE+++    +GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K + D+ILLETTGLA+P  +AS+ W+D +L S + LD IITVVD+K
Sbjct:   60 ILTEQHNRKIAVILNEFGEGSAVEKSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSK 170          
BLAST of CX300332 vs. ExPASy Swiss-Prot
Match: CBWD2_HUMAN (COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.739e-29
Identity = 60/112 (53.57%), Postives = 86/112 (76.79%), Query Frame = 1
Query:    1 ILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALIEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 336
            IL  +H KR+AVILNEFGE   +E+++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D+ILLETTGLA+P  +AS+ W+D +L S + LD IIT+VD+K
Sbjct:   62 ILTEQHSKRVAVILNEFGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSK 172          
BLAST of CX300332 vs. ExPASy Swiss-Prot
Match: CBWD1_RAT (COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.577e-29
Identity = 61/112 (54.46%), Postives = 86/112 (76.79%), Query Frame = 1
Query:    1 ILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALIEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 336
            IL  +H ++IAVILNEFGE   VE+++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D+ILLETTGLA+P  +AS+ W+D +L S + LD IITVVD+K
Sbjct:   61 ILTEQHNRKIAVILNEFGEGSAVEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLKAIENLMQKKGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSK 171          
BLAST of CX300332 vs. ExPASy Swiss-Prot
Match: CBWD6_HUMAN (COBW domain-containing protein 6 OS=Homo sapiens GN=CBWD6 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.166e-28
Identity = 59/112 (52.68%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    1 ILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALIEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 336
            IL  +H KR+AVILNE GE   +E+++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P  +AS+ W+D +L S + LD IIT+VD+K
Sbjct:   62 ILTEQHSKRVAVILNESGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSK 172          
BLAST of CX300332 vs. ExPASy Swiss-Prot
Match: CBWD3_HUMAN (COBW domain-containing protein 3 OS=Homo sapiens GN=CBWD3 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.166e-28
Identity = 59/112 (52.68%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    1 ILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALIEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 336
            IL  +H KR+AVILNE GE   +E+++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P  +AS+ W+D +L S + LD IIT+VD+K
Sbjct:   62 ILTEQHSKRVAVILNESGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPGAVASMFWVDAELGSDIYLDGIITIVDSK 172          
BLAST of CX300332 vs. ExPASy Swiss-Prot
Match: CBWD5_HUMAN (COBW domain-containing protein 5 OS=Homo sapiens GN=CBWD5 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.503e-27
Identity = 58/112 (51.79%), Postives = 83/112 (74.11%), Query Frame = 1
Query:    1 ILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALIEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAK 336
            IL  +H KR+AVILNE GE   +E+++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P  + S+ W+D +L S + LD IIT+VD+K
Sbjct:   62 ILTEQHSKRVAVILNESGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPGAVTSMFWVDAELGSDIYLDGIITIVDSK 172          
BLAST of CX300332 vs. ExPASy Swiss-Prot
Match: YN8H_YEAST (Uncharacterized protein YNR029C OS=Saccharomyces cerevisiae GN=YNR029C PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.191e-24
Identity = 53/113 (46.90%), Postives = 85/113 (75.22%), Query Frame = 1
Query:   22 KRIAVILNEFGEEIGVERAMINEGEGGALIEEWVELANGCICCTVKHSLVQALEQLVQRKE-RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITVVDAKNLLFQID 357
            K+IAVILNEFG+   +E+AM  +  G    +EW++L NGC+CC++K+  V+A+E +V+R   ++D+ILLET+G+A+PAP+A + W D+ L S+V +D IITV+D +++L  +D
Sbjct:   98 KKIAVILNEFGDSSEIEKAMTIKN-GSNSYQEWLDLGNGCLCCSLKNIGVKAIEDMVERSPGKIDYILLETSGIADPAPIAKMFWQDEGLNSSVYIDGIITVLDCEHILKCLD 209          
BLAST of CX300332 vs. ExPASy Swiss-Prot
Match: COBW_PSEDE (Protein cobW OS=Pseudomonas denitrificans GN=cobW PE=3 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 1.841e-17
Identity = 47/113 (41.59%), Postives = 73/113 (64.60%), Query Frame = 1
Query:    1 ILNGKHGKRIAVILNEFGEEIGVERAMINE-GEGGALIEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPL-ASVLWLDDQLESAVRLDSIITVVDA 333
            +L    GKRI +I+NEFG+ +GV+  ++   G      ++ +EL NGCICCTV    +  + +L++R+ R DHI++ET+GLA P PL A+  W D  + S V +D ++TVVD+
Sbjct:   31 LLQNADGKRIGLIINEFGD-LGVDGDVLKGCGAEACTEDDIIELTNGCICCTVADDFIPTMTKLLERENRPDHIIIETSGLALPQPLIAAFNWPD--IRSEVTVDGVVTVVDS 140          
The following BLAST results are available for this feature:
BLAST of CX300332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
YOG5_SCHPO1.006e-3151.75COBW domain-containing protein C15D4.05 OS=Schizos... [more]
CBWD1_HUMAN1.229e-2954.46COBW domain-containing protein 1 OS=Homo sapiens G... [more]
CBWD1_MOUSE1.606e-2955.36COBW domain-containing protein 1 OS=Mus musculus G... [more]
CBWD2_HUMAN2.739e-2953.57COBW domain-containing protein 2 OS=Homo sapiens G... [more]
CBWD1_RAT3.577e-2954.46COBW domain-containing protein 1 OS=Rattus norvegi... [more]
CBWD6_HUMAN5.166e-2852.68COBW domain-containing protein 6 OS=Homo sapiens G... [more]
CBWD3_HUMAN5.166e-2852.68COBW domain-containing protein 3 OS=Homo sapiens G... [more]
CBWD5_HUMAN1.503e-2751.79COBW domain-containing protein 5 OS=Homo sapiens G... [more]
YN8H_YEAST1.191e-2446.90Uncharacterized protein YNR029C OS=Saccharomyces c... [more]
COBW_PSEDE1.841e-1741.59Protein cobW OS=Pseudomonas denitrificans GN=cobW ... [more]

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Properties
Property NameValue
Genbank descriptionC07008H02SK NTLeaf1 Citrus clementina cDNA clone C07008H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300332 ID=CX300332; Name=CX300332; organism=Citrus clementina; type=EST; length=362bp
ATCTTGAATGGGAAACATGGAAAGAGAATTGCTGTCATCTTGAATGAGTT
TGGTGAAGAGATTGGAGTTGAGAGAGCAATGATAAATGAAGGAGAAGGAG
GTGCACTAATTGAAGAGTGGGTGGAGTTGGCAAATGGGTGCATTTGTTGC
ACTGTTAAACATAGTTTAGTTCAAGCACTCGAGCAACTTGTACAGAGAAA
AGAAAGACTTGATCATATTTTGCTCGAGACCACTGGGTTAGCAAATCCTG
CTCCTCTGGCATCTGTTCTTTGGTTGGATGACCAGCTGGAATCAGCTGTC
AGGCTTGATTCTATTATCACTGTTGTGGATGCCAAAAATCTTCTTTTCCA
GATTGATAAGTA
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