CX300333

Overview
NameCX300333
Unique NameCX300333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length286
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig410 contig Ccv1_Contig410:47..332. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300333 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.695e-31
Identity = 64/73 (87.67%), Postives = 67/73 (91.78%), Query Frame = 3
Query:   63 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVGVDFTASWCGPCRFIAPFLAELAKKLPNDLFLKGDVDELKSVA 281
            AAEEGQVIGCHTVEAWNEQLQK N+TK L+ VDFTASWCGPCRFIAPFLAELAKKLPN  FLK DVDELK+VA
Sbjct:    2 AAEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVA 74          
BLAST of CX300333 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.453e-30
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 3
Query:   63 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVGVDFTASWCGPCRFIAPFLAELAKKLPNDLFLKGDVDELKSVAT 284
            A+EEGQVI CHTVE WNEQLQK+NE+K LV VDFTASWCGPCRFIAPF A+LAKKLPN LFLK D DELKSVA+
Sbjct:    2 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVAS 75          
BLAST of CX300333 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.064e-25
Identity = 55/73 (75.34%), Postives = 61/73 (83.56%), Query Frame = 3
Query:   66 AEEGQVIGCHTVEAWNEQLQKSNETKQLVGVDFTASWCGPCRFIAPFLAELAKKLPNDLFLKGDVDELKSVAT 284
            AEEGQVIG HTV+AWNE LQK  + K+L+ VDFTASWCGPC+FIA F AELAKK+P   FLK DVDELKSVAT
Sbjct:    2 AEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVAT 74          
BLAST of CX300333 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.096e-25
Identity = 51/76 (67.11%), Postives = 63/76 (82.89%), Query Frame = 3
Query:   54 EMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVGVDFTASWCGPCRFIAPFLAELAKKLPNDLFLKGDVDELKSVA 281
            +  ++EEGQV GCH VE WNE  +K  ETK+LV VDFTASWCGPCRFIAP LA++AKK+P+ +FLK DVDELK+V+
Sbjct:    5 DATSSEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVS 80          
BLAST of CX300333 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.465e-22
Identity = 45/72 (62.50%), Postives = 59/72 (81.94%), Query Frame = 3
Query:   66 AEEGQVIGCHTVEAWNEQLQKSNETKQLVGVDFTASWCGPCRFIAPFLAELAKKLPNDLFLKGDVDELKSVA 281
            A EG+VI CHT+E WNE+++ +NE+K+L+ +DFTASWC PCRFIAP  AE+AKK  N +F K DVDEL++VA
Sbjct:    2 AGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVA 73          
BLAST of CX300333 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.138e-22
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 3
Query:   66 AEEGQVIGCHTVEAWNEQLQKSNETKQLVGVDFTASWCGPCRFIAPFLAELAKKLPNDLFLKGDVDELKSVA 281
            AEE QVI CHTV+ WNE+ QK+ ++ +L+ +DFTASWCGPCR I P+++ELAKK P+  F K DVD+LK VA
Sbjct:    2 AEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVA 73          
BLAST of CX300333 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.999e-20
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 3
Query:   66 AEEGQVIGCHTVEAWNEQLQKSNETKQLVGVDFTASWCGPCRFIAPFLAELAKKLPNDLFLKGDVDELKSVA 281
            A EG+VI CHTVE W E+L+ +NE+K+L+ +DFTA+WC PCRFIAP  A+LAKK  + +F K DVDEL +VA
Sbjct:    2 AAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVA 73          
BLAST of CX300333 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.681e-20
Identity = 45/73 (61.64%), Postives = 54/73 (73.97%), Query Frame = 3
Query:   63 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVGVDFTASWCGPCRFIAPFLAELAKKLPNDLFLKGDVDELKSVA 281
            AAEEG VI CH  + ++ Q+ K+ E  ++V +DFTASWCGPCRFIAP  AE AKK P  +FLK DVDELK VA
Sbjct:    2 AAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVA 74          
BLAST of CX300333 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.681e-20
Identity = 45/73 (61.64%), Postives = 54/73 (73.97%), Query Frame = 3
Query:   63 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVGVDFTASWCGPCRFIAPFLAELAKKLPNDLFLKGDVDELKSVA 281
            AAEEG VI CH  + ++ Q+ K+ E  ++V +DFTASWCGPCRFIAP  AE AKK P  +FLK DVDELK VA
Sbjct:    2 AAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVA 74          
BLAST of CX300333 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 1.140e-19
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 3
Query:   51 AEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVGVDFTASWCGPCRFIAPFLAELAKKLPNDLFLKGDVDELKSVA 281
            A  AA   G+VI  H++E W  Q++++N  K+LV +DFTASWCGPCR +AP  A+LAKK P  +FLK DVDELK +A
Sbjct:   10 ATAAAVGAGEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIA 86          
The following BLAST results are available for this feature:
BLAST of CX300333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TRXH_RICCO1.695e-3187.67Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH5.453e-3082.43Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC1.064e-2575.34Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC3.096e-2567.11Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH5_ARATH5.465e-2262.50Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_FAGES7.138e-2261.11Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH3_ARATH2.999e-2061.11Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_ORYSJ6.681e-2061.64Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI6.681e-2061.64Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_WHEAT1.140e-1955.84Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC07008H04SK NTLeaf1 Citrus clementina cDNA clone C07008H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300333 ID=CX300333; Name=CX300333; organism=Citrus clementina; type=EST; length=286bp
GAGAATAGAAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAA
GCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGT
TGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGG
TTGGTGTTGATTTCACTGCTTCGTGGTGCGGACCATGCCGTTTCATTGCT
CCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGATCTGTTTCTGAA
GGGTGATGTGGATGAACTGAAGAGTGTTGCCACTGA
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