CX300334 | Citrus Genome Database

Overview


Name	CX300334
Unique Name	CX300334
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	389

Libraries


Library Name	Type
NTLeaf1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig614	contig	Ccv1_Contig614:344..731.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.005e-31
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1

Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  198 ADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263

[Close]

BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.005e-31
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 1

Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  198 ADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263

[Close]

BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 2.239e-31
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 1

Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  200 ADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265

[Close]

BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.988e-31
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 1

Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWA+ATNFVPGK
Sbjct:  200 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265

[Close]

BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.988e-31
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 1

Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL+DH+ADPVANNAWAYATNFVPGK
Sbjct:  200 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265

[Close]

BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.988e-31
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 1

Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDPD FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI+NLYDH+ADPVANNAWA+ATNFVPG+
Sbjct:  200 ADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265

[Close]

BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.451e-30
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1

Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHIADPVANNAWAYATNFVPGK
Sbjct:  172 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237

[Close]

BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.895e-30
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1

Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWAYATNFVPGK
Sbjct:  201 ADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266

[Close]

BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.475e-30
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1

Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDP+  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWAYATNFVPGK
Sbjct:   85 ADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150

[Close]

BLAST of CX300334 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.222e-30
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 1

Query:   16 ADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 213
            ADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  213 ADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278

The following BLAST results are available for this feature:

BLAST of CX300334 vs. ExPASy Swiss-Prot

BLAST of CX300334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68


Match Name	E-value	Identity	Description
CB23_ORYSJ	1.005e-31	95.45	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB23_ORYSI	1.005e-31	95.45	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB21_GOSHI	2.239e-31	93.94	Chlorophyll a-b binding protein 151, chloroplastic...	[more]
CB26_PETSP	4.988e-31	92.42	Chlorophyll a-b binding protein 37, chloroplastic ...	[more]
CB23_TOBAC	4.988e-31	92.42	Chlorophyll a-b binding protein 36, chloroplastic ...	[more]
CB215_PEA	4.988e-31	92.42	Chlorophyll a-b binding protein 215, chloroplastic...	[more]
CB25_SOLLC	1.451e-30	93.94	Chlorophyll a-b binding protein 5, chloroplastic (...	[more]
CB21_PINTH	1.895e-30	92.42	Chlorophyll a-b binding protein type I, chloroplas...	[more]
CB22_PINSY	2.475e-30	92.42	Chlorophyll a-b binding protein type 2 member 2 (F...	[more]
CB2A_PINSY	4.222e-30	92.42	Chlorophyll a-b binding protein type 2 member 1A, ...	[more]

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Properties


Property Name	Value
Genbank description	C07008H05SK NTLeaf1 Citrus clementina cDNA clone C07008H05, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300334 ID=CX300334; Name=CX300334; organism=Citrus clementina; type=EST; length=389bp
CCCCGGGCTGCAGGGGCTGATGACCCCGATCAATTTGCTGAGTTGAAGGT
CAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTGGATTCT
TTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACCTCTACGAC
CACATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAACTT
TGTTCCCGGAAAGTGAAGAAACTCATGACTTGATGGTGTCTGTTTCATCT
GTAACATTATTCTATCTATCGTATGTGCTTTTGTGGAAAACTCTGTCATG
GACTTACTAGTAGCTCTGTAATGTTACCATTAGAAATGCTATGCTCCTGA
TCTTTTATTTCCATCAAAAAAAAAAAAAAAAACTCGAGG