CX300339

Overview
NameCX300339
Unique NameCX300339
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length359
Libraries
Library NameType
NTLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3373 contig Ccv1_Contig3373:24..382. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS1_POPNI (Plastocyanin A, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.944e-23
Identity = 55/95 (57.89%), Postives = 65/95 (68.42%), Query Frame = 2
Query:   74 GLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            GLKAG+     V ++ K SAS +P+LSIKA++KDVG                  I+VLLG DDGSLAFVPS FS+S GEKIVFKNNAGFPHN+VF
Sbjct:   16 GLKAGSASNAKVSASAKVSASPLPRLSIKASMKDVGAAVVATAASAMIASNAMAIDVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGFPHNIVF 110          
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS_SOLLC (Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.553e-22
Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 2
Query:   74 GLKAGATPARVV--GSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            GLKAGA+ +  V  G++ K +A+ V +L++KA+LKDVG                  +EVLLGGDDGSLAF+P +FSVS+GEKI FKNNAGFPHNVVF
Sbjct:   16 GLKAGASSSSRVSTGASAKVAAAPVARLTVKASLKDVGAVVAATAVSAMLASNAMALEVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVF 112          
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS2_POPNI (Plastocyanin B, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.471e-22
Identity = 53/95 (55.79%), Postives = 64/95 (67.37%), Query Frame = 2
Query:   74 GLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            GLKA +     V ++ K SAS +P+LSIKA+LK+VG                  ++VLLG DDGSLAFVPS FSV +GEKIVFKNNAGFPHNV+F
Sbjct:   16 GLKAASASNAKVSASAKVSASPLPRLSIKASLKEVGAAVVATAASAMIASNAMAVDVLLGADDGSLAFVPSEFSVPAGEKIVFKNNAGFPHNVLF 110          
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS_SPIOL (Plastocyanin, chloroplastic OS=Spinacia oleracea GN=PETE PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.369e-19
Identity = 52/99 (52.53%), Postives = 65/99 (65.66%), Query Frame = 2
Query:   74 GLKAGA----TPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            GLKA      T A+++ +T     +AVP+LS+KA+LK+VG                  +EVLLGG DGSLAF+P  FSV+SGE+IVFKNNAGFPHNVVF
Sbjct:   17 GLKASGSIKPTTAKIIPTT-----TAVPRLSVKASLKNVGAAVVATAAAGLLAGNAMAVEVLLGGGDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVF 110          
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS1_ARATH (Plastocyanin minor isoform, chloroplastic OS=Arabidopsis thaliana GN=PETE PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.672e-18
Identity = 51/98 (52.04%), Postives = 60/98 (61.22%), Query Frame = 2
Query:   74 GLKAGATPARVVGSTMKASASAV---PKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            GLK   +      ST+  S SA    PKL++K++LKD G                  +EVLLG DDGSLAFVPS F+V+ GEKIVFKNNAGFPHNVVF
Sbjct:   16 GLKLAVSSKPKTLSTISRSTSATRAPPKLALKSSLKDFGVIAVATAASIVLAGNAMAMEVLLGSDDGSLAFVPSEFTVAKGEKIVFKNNAGFPHNVVF 113          
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS_SILPR (Plastocyanin, chloroplastic OS=Silene pratensis GN=PETE PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.353e-18
Identity = 51/95 (53.68%), Postives = 59/95 (62.11%), Query Frame = 2
Query:   74 GLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            GLKA +T      +T+K  A A P++SIKA+LKDVG                   EVLLG  DG LAFVPS  S++SGEKI FKNNAGFPHNVVF
Sbjct:   17 GLKASSTTR---AATVKV-AVATPRMSIKASLKDVGVVVAATAAAGILAGNAMAAEVLLGSSDGGLAFVPSDLSIASGEKITFKNNAGFPHNVVF 107          
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS2_ARATH (Plastocyanin major isoform, chloroplastic OS=Arabidopsis thaliana GN=DRT112 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.414e-17
Identity = 46/95 (48.42%), Postives = 60/95 (63.16%), Query Frame = 2
Query:   74 GLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            GLKA    +      ++ +A A PKL++K++LK+ G                  IEVLLGG DGSLAF+P+ FS++ GEKIVFKNNAG+PHNVVF
Sbjct:   16 GLKASTIKSSAT-VRIQTAAVASPKLTVKSSLKNFGVAAVAAAASIALAGNAMAIEVLLGGGDGSLAFIPNDFSIAKGEKIVFKNNAGYPHNVVF 109          
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS_PEA (Plastocyanin, chloroplastic OS=Pisum sativum GN=PETE PE=4 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.174e-17
Identity = 46/95 (48.42%), Postives = 54/95 (56.84%), Query Frame = 2
Query:   74 GLKAGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            GLK  A       + +  S S  P+L ++A+LKD G                  +EVLLG  DG LAFVPSS  VS+GE IVFKNNAGFPHNVVF
Sbjct:   16 GLKTNAATKVSAMAKIPTSTSQSPRLCVRASLKDFGVALVATAASAVLASNALAVEVLLGASDGGLAFVPSSLEVSAGETIVFKNNAGFPHNVVF 110          
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS_CUCPE (Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.574e-15
Identity = 36/41 (87.80%), Postives = 40/41 (97.56%), Query Frame = 2
Query:  236 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            IEVLLGGDDGSLAF+P+ FSV++GEKIVFKNNAGFPHNVVF
Sbjct:    1 IEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVF 41          
BLAST of CX300339 vs. ExPASy Swiss-Prot
Match: PLAS_CUCSA (Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.465e-14
Identity = 35/41 (85.37%), Postives = 40/41 (97.56%), Query Frame = 2
Query:  236 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVF 358
            IE+LLGGDDGSLAFVP++F+V+SGEKI FKNNAGFPHNVVF
Sbjct:    1 IEILLGGDDGSLAFVPNNFTVASGEKITFKNNAGFPHNVVF 41          
The following BLAST results are available for this feature:
BLAST of CX300339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PLAS1_POPNI2.944e-2357.89Plastocyanin A, chloroplastic OS=Populus nigra GN=... [more]
PLAS_SOLLC5.553e-2255.67Plastocyanin, chloroplastic OS=Solanum lycopersicu... [more]
PLAS2_POPNI9.471e-2255.79Plastocyanin B, chloroplastic OS=Populus nigra GN=... [more]
PLAS_SPIOL3.369e-1952.53Plastocyanin, chloroplastic OS=Spinacia oleracea G... [more]
PLAS1_ARATH1.672e-1852.04Plastocyanin minor isoform, chloroplastic OS=Arabi... [more]
PLAS_SILPR6.353e-1853.68Plastocyanin, chloroplastic OS=Silene pratensis GN... [more]
PLAS2_ARATH2.414e-1748.42Plastocyanin major isoform, chloroplastic OS=Arabi... [more]
PLAS_PEA9.174e-1748.42Plastocyanin, chloroplastic OS=Pisum sativum GN=PE... [more]
PLAS_CUCPE6.574e-1587.80Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1[more]
PLAS_CUCSA1.465e-1485.37Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07008H11SK NTLeaf1 Citrus clementina cDNA clone C07008H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300339 ID=CX300339; Name=CX300339; organism=Citrus clementina; type=EST; length=359bp
AAACAGCAGAACCCCATTTACAGTTACAATGGCTACTGTCACCTCTGCAG
CTGTCACCGTCCCAACTTTCACCGGCCTTAAAGCCGGTGCAACACCAGCC
AGAGTTGTTGGTTCCACCATGAAGGCCTCAGCCTCTGCTGTCCCAAAGCT
CAGCATCAAGGCCACACTCAAAGATGTTGGAGTGGCCGTTGCGGCCACAG
CTGCCAGCGCAATGCTTGCTAGCAATGCCATGGCCATTGAGGTTTTGCTT
GGTGGTGATGATGGGTCCTTGGCTTTTGTTCCAAGCTCTTTCTCTGTCAG
CTCCGGTGAAAAGATTGTGTTCAAGAACAATGCTGGGTTCCCACACAACG
TTGTTTTCG
back to top