CX300344

Overview
NameCX300344
Unique NameCX300344
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9765 contig Ccv1_Contig9765:462..952. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300344 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 4.754e-65
Identity = 113/126 (89.68%), Postives = 123/126 (97.62%), Query Frame = 3 
Query:    3 WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTP 380
            WFEAGADPGAIAPFSFG+LLGTQL+LMGWVESKRWVDFF+P+SQSVEWATPWS+TAENFAN TGEQGYPGGKFFDPL LAGT+ +GVY+PDTEKL+RLKVAEIKHARLAM+AMLIFYFEAGQGKTP
Sbjct:  125 WFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEAGQGKTP 250
[Close]
BLAST of CX300344 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 3.081e-64
Identity = 112/126 (88.89%), Postives = 123/126 (97.62%), Query Frame = 3 
Query:    3 WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTP 380
            WFEAGADPGA+APFSFG+LLGTQLLLMGWVESKRWVDFF+P+SQSVEWATPWSRTAENF+N+TGEQGYPGGKFFDPL LAGTI +GVY PDT+KL+RLK+AEIKHARLAM+AMLIFYFEAGQGKTP
Sbjct:  130 WFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTP 255
[Close]
BLAST of CX300344 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.997e-63
Identity = 110/126 (87.30%), Postives = 122/126 (96.83%), Query Frame = 3 
Query:    3 WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTP 380
            WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF+ +SQS++WATPWS+TAENFAN TGEQGYPGGKFFDPL LAGT+ +GVY+PDTEKL+RLK+AEIKH+RLAM+AMLIFYFEAGQGKTP
Sbjct:  125 WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEAGQGKTP 250
The following BLAST results are available for this feature:
BLAST of CX300344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CB4A_SOLLC4.754e-6589.68Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4_SPIOL3.081e-6488.89Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4B_SOLLC1.997e-6387.30Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionC07009A08SK SaltLeaf1 Citrus clementina cDNA clone C07009A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300344 ID=CX300344; Name=CX300344; organism=Citrus clementina; type=EST; length=491bp
CATGGTTCGAGGCTGGAGCAGATCCTGGAGCCATAGCACCCTTCTCCTTC
GGCTCACTCCTGGGAACCCAGCTTCTCCTTATGGGTTGGGTTGAGAGCAA
GCGGTGGGTTGATTTTTTCAATCCTGAATCTCAATCAGTTGAATGGGCAA
CACCTTGGTCAAGAACTGCTGAAAACTTTGCCAATGCGACTGGTGAACAA
GGCTACCCTGGTGGAAAGTTTTTTGATCCCTTATGTTTGGCTGGAACAAT
TAAGGATGGTGTCTACATTCCTGACACTGAGAAGCTTGACAGGCTCAAAG
TTGCTGAGATTAAACATGCTAGGCTTGCTATGGTGGCCATGTTGATTTTC
TACTTTGAAGCTGGCCAAGGCAAGACGCCACTTGGGGCTCTTGGTTTGTA
AAACATGCTTATGTAGATAACTCACTGATTGGTGTTAAAGCGTAATCAAT
CGGATGTATATGAGTTCCCTCAATGAGAGTTCAATTTGATG
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