CX300348

Overview
NameCX300348
Unique NameCX300348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2788 contig Ccv1_Contig2788:645..1107. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 5.339e-57
Identity = 108/136 (79.41%), Postives = 121/136 (88.97%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 411
            E L+HLGADSFL SRD DQ+Q A+GT+DGIIDTVSA HP+LPL+GLL S GKLV+VGAP+KPLELPV  L+MGRK V+GS  GGMKETQEMIDFAA+HNITADIEVI +DY+NTAMERL KADVRYRFVIDI NTL
Sbjct:  220 EALKHLGADSFLVSRDQDQMQAAIGTMDGIIDTVSAQHPLLPLIGLLNSHGKLVMVGAPEKPLELPVFPLLMGRKMVAGSGIGGMKETQEMIDFAARHNITADIEVIPIDYLNTAMERLVKADVRYRFVIDIGNTL 355          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 3.826e-55
Identity = 103/138 (74.64%), Postives = 120/138 (86.96%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLYA 417
            E +  LGADSF+ SR+P+Q+Q AMGTLDGIIDTVSA HP+LPL+GLLKSQGK+++VG PDKPLELPV  L+ GRK ++GS  GGMKETQEMIDFAAKH+I +DIEV+ MDYVNTAMERL K DVRYRFVID+ANTL A
Sbjct:  223 EAVNRLGADSFVVSREPEQMQSAMGTLDGIIDTVSAAHPLLPLLGLLKSQGKMIMVGVPDKPLELPVFPLLQGRKILAGSCIGGMKETQEMIDFAAKHDIKSDIEVVPMDYVNTAMERLLKGDVRYRFVIDVANTLKA 360          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 2.100e-53
Identity = 100/136 (73.53%), Postives = 119/136 (87.50%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 411
            E LE LGAD FL S D DQ+Q A GTL GIIDTVSA+HP++PL+GLLK  GKLV+VGAP+KPLELPV  L+MGRK ++GS+ GG+KETQEM+DFAA+HNITAD+EVI +DYVNTAMERL K+DVRYRFVID+ANT+
Sbjct:  199 EALEKLGADEFLVSSDSDQMQAATGTLHGIIDTVSALHPVVPLLGLLKVNGKLVMVGAPEKPLELPVFPLLMGRKVLAGSNIGGLKETQEMLDFAAQHNITADVEVIPVDYVNTAMERLVKSDVRYRFVIDVANTI 334          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 2.742e-53
Identity = 102/139 (73.38%), Postives = 119/139 (85.61%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLYAT 420
            E +  LGAD+FL SRDP Q++ AMGT+DGIIDTVSA HP+LPL+GLLK++GKLV+VGAP +PLELPV  LI GRK V GS  GG+KETQEM+D A KHNITADIE+IS DYVNTAMERLAKADV+YRFVID+ANT+  T
Sbjct:  218 EAVTRLGADAFLVSRDPKQMKDAMGTMDGIIDTVSATHPLLPLLGLLKNKGKLVMVGAPAEPLELPVFPLIFGRKMVVGSMVGGIKETQEMVDLAGKHNITADIELISADYVNTAMERLAKADVKYRFVIDVANTMKPT 356          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 2.321e-52
Identity = 102/136 (75.00%), Postives = 116/136 (85.29%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 411
            E +  LGAD+FL SRDP Q++ AMGT+DGIIDTVSA H +LPL+GLLK +GKLV+VGAP+KPLELPV+ LI  RK V GS  GG+KETQEMID A KHNITADIE+IS DYVNTAMERL KADVRYRFVID+ANTL
Sbjct:  218 EAINRLGADAFLVSRDPKQIKDAMGTMDGIIDTVSATHSLLPLLGLLKHKGKLVMVGAPEKPLELPVMPLIFERKMVMGSMIGGIKETQEMIDMAGKHNITADIELISADYVNTAMERLEKADVRYRFVIDVANTL 353          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 2.173e-50
Identity = 97/140 (69.29%), Postives = 118/140 (84.29%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLYATK 423
            + L+ LGAD FL S D DQ++ AMGT+DGIIDTVSA H I PL+GLLKS GKLVL+GA +KP ++   SLI+GRK+++GS  GGM+ETQEMIDFAA+H I A+IE+ISMDYVNTAM+RLAK DVRYRFVIDI+NTL AT+
Sbjct:  223 DALDTLGADGFLVSTDEDQMKAAMGTMDGIIDTVSASHSISPLIGLLKSNGKLVLLGATEKPFDISAFSLILGRKSIAGSGIGGMQETQEMIDFAAEHGIKAEIEIISMDYVNTAMDRLAKGDVRYRFVIDISNTLAATR 362          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.078e-49
Identity = 96/136 (70.59%), Postives = 112/136 (82.35%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 411
            E LE LGADSFL + D +Q++GA  +LDGIIDTV   HP+ PL  LLK  GKLV+VGAP+KP ELPV SL+ GRK + G+  GG+KETQEM+DFAAKHNITAD+EVI MDYVNTAMERL K+DVRYRFVIDIANT+
Sbjct:  222 EALEKLGADSFLLNSDQEQMKGARSSLDGIIDTVPVNHPLAPLFDLLKPNGKLVMVGAPEKPFELPVFSLLKGRKLLGGTINGGIKETQEMLDFAAKHNITADVEVIPMDYVNTAMERLVKSDVRYRFVIDIANTM 357          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.078e-49
Identity = 91/136 (66.91%), Postives = 114/136 (83.82%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 411
            E ++HLG D F+ S DP Q+Q A+GTLDGIIDTVSA HPI+PL+ LLK  GKL++VG PDKPL+LPV  LI GR+T++GS  GG+KETQEMIDFAAK+NI AD+EVI +DY+NTAM+RL K+DV+YRFVID+  +L
Sbjct:  222 EAMQHLGVDEFVVSTDPQQMQAAVGTLDGIIDTVSAPHPIVPLLSLLKPHGKLIVVGLPDKPLQLPVFPLIQGRRTIAGSGIGGLKETQEMIDFAAKNNIVADVEVIPIDYINTAMDRLLKSDVKYRFVIDVEKSL 357          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 1.078e-49
Identity = 92/136 (67.65%), Postives = 114/136 (83.82%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTL 411
            E + HLGADSFL + DP +++ A+GT+D IIDT+SAVH + PL+GLLK  GKL+ +G P+KPLELP+  L++GRK V GS  GGMKETQEM+DF AKHNITADIE+I MD +NTAMERLAK+DVRYRFVID+AN+L
Sbjct:  222 EAINHLGADSFLVTTDPQKMKAAIGTMDYIIDTISAVHALYPLLGLLKVNGKLIALGLPEKPLELPMFPLVLGRKMVGGSDVGGMKETQEMLDFCAKHNITADIELIKMDEINTAMERLAKSDVRYRFVIDVANSL 357          
BLAST of CX300348 vs. ExPASy Swiss-Prot
Match: MTDH3_STYHU (Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.408e-49
Identity = 96/139 (69.06%), Postives = 115/139 (82.73%), Query Frame = 1
Query:    4 EVLEHLGADSFLNSRDPDQLQGAMGTLDGIIDTVSAVHPILPLVGLLKSQGKLVLVGAPDKPLELPVISLIMGRKTVSGSSTGGMKETQEMIDFAAKHNITADIEVISMDYVNTAMERLAKADVRYRFVIDIANTLYAT 420
            E +++LGADSFL SRDPDQ++    TLDGIIDTVSA H I+PL+GLLKS GKLVL+GA +KPLELP   LI+GRK V G+  GG+KETQEMIDF+ KHN+  +IEV+ MDYVN AM+RLAKADV+YRFVID+ANTL  T
Sbjct:  224 EAIKNLGADSFLVSRDPDQMEAPKETLDGIIDTVSADHSIVPLIGLLKSHGKLVLIGAIEKPLELPPFPLILGRKLVGGTLVGGLKETQEMIDFSPKHNVKPEIEVVPMDYVNIAMQRLAKADVKYRFVIDVANTLKPT 362          
The following BLAST results are available for this feature:
BLAST of CX300348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
MTDH_FRAAN5.339e-5779.41Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
MTDH_MESCR3.826e-5574.64Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
MTDH_PETCR2.100e-5373.53Mannitol dehydrogenase (Fragment) OS=Petroselinum ... [more]
CADH7_ARATH2.742e-5373.38Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
CADH8_ARATH2.321e-5275.00Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]
CADH6_ARATH2.173e-5069.29Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
MTDH_APIGR1.078e-4970.59Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
GEDH1_OCIBA1.078e-4966.91Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]
CADH9_ARATH1.078e-4967.65Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]
MTDH3_STYHU1.408e-4969.06Probable mannitol dehydrogenase 3 OS=Stylosanthes ... [more]

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Properties
Property NameValue
Genbank descriptionC07009A12SK SaltLeaf1 Citrus clementina cDNA clone C07009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300348 ID=CX300348; Name=CX300348; organism=Citrus clementina; type=EST; length=463bp
ACTGAAGTTCTTGAACATCTTGGCGCTGATTCATTTTTGAATAGCCGTGA
CCCTGACCAATTGCAGGGTGCTATGGGCACATTGGATGGTATTATTGACA
CGGTGTCCGCTGTGCACCCCATTTTGCCATTGGTCGGTCTATTAAAGTCC
CAGGGCAAGCTTGTTCTGGTTGGTGCTCCGGACAAGCCACTCGAGCTACC
TGTGATTTCCTTAATTATGGGGAGGAAGACGGTGTCAGGGAGCAGCACTG
GGGGAATGAAAGAGACGCAAGAGATGATTGATTTTGCAGCAAAACACAAT
ATAACAGCTGACATTGAGGTTATTTCGATGGATTATGTCAATACGGCAAT
GGAGAGGCTTGCCAAGGCTGATGTTCGGTATCGATTTGTCATTGATATTG
CAAACACCTTGTACGCCACCAAACCTTGAAGAATCAGAATCAGATTGATG
TCTTCAATTCACA
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