CX300349

Overview
NameCX300349
Unique NameCX300349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP12_ARATH (Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 8.950e-56
Identity = 110/141 (78.01%), Postives = 122/141 (86.52%), Query Frame = 1
Query:    4 TLRLLF-------QEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLK 405
            TLRLLF         K D F GTLP+GSN+Q+FV+EFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNV+ AGP++GASMNP RSLGPA+V S Y+GLWIYIV+P +GA +GAWVYNMVRYTDKPLREITKS SFLK
Sbjct:  146 TLRLLFGLDQDVCSGKHDVFVGTLPSGSNLQSFVIEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVIIAGPVSGASMNPGRSLGPAMVYSCYRGLWIYIVSPIVGAVSGAWVYNMVRYTDKPLREITKSGSFLK 286          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NO26_SOYBN (Nodulin-26 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 1.994e-55
Identity = 101/140 (72.14%), Postives = 120/140 (85.71%), Query Frame = 1
Query:    1 GTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGRS 420
            GTLRLLF    DQF+GT+P G+N+QAFV EFI+TF+LMFVI GVATDNRA+GE AG+A+GST+LLNV+  GP+TGASMNPARSLGPA V  +Y+G+WIY++AP +GA AGAWVYN+VRYTDKPL E TKSASFLKG   S
Sbjct:  131 GTLRLLFMGNHDQFSGTVPNGTNLQAFVFEFIMTFFLMFVICGVATDNRAVGEFAGIAIGSTLLLNVIIGGPVTGASMNPARSLGPAFVHGEYEGIWIYLLAPVVGAIAGAWVYNIVRYTDKPLSETTKSASFLKGRAAS 270          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP11_ORYSJ (Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.292e-54
Identity = 99/139 (71.22%), Postives = 120/139 (86.33%), Query Frame = 1
Query:    1 GTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGR 417
            GTLRL+F  + + F GTLPAGS++Q+ V+EFIITFYLMFVISGVATDNRAIGELAGLAVG+T+LLNV+ AGPI+GASMNPARSLGPA++  +Y+ +W+YIV P  GA AGAW YN++R+T+KPLREITKS SFLK   R
Sbjct:  141 GTLRLMFGGRHEHFPGTLPAGSDVQSLVLEFIITFYLMFVISGVATDNRAIGELAGLAVGATILLNVLIAGPISGASMNPARSLGPAMIGGEYRSIWVYIVGPVAGAVAGAWAYNIIRFTNKPLREITKSGSFLKSMNR 279          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP11_MAIZE (Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 7.091e-53
Identity = 95/139 (68.35%), Postives = 117/139 (84.17%), Query Frame = 1
Query:    1 GTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGR 417
            GTLRL+F  + + F GTLP GS +Q+ V+E I TFYLMFVISGVATDNRAIGELAGLAVG+T+LLNV+ AGP++GASMNPARS+GPA+VS +Y  +W+Y+V P +GA AGAW YN++R+T+KPLREITKS SFLK   R
Sbjct:  137 GTLRLMFGGRHEHFPGTLPTGSEVQSLVIEIITTFYLMFVISGVATDNRAIGELAGLAVGATILLNVLIAGPVSGASMNPARSVGPALVSGEYTSIWVYVVGPVVGAVAGAWAYNLIRFTNKPLREITKSTSFLKSTSR 275          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP11_ARATH (Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.580e-52
Identity = 103/141 (73.05%), Postives = 115/141 (81.56%), Query Frame = 1
Query:    4 TLRLLF-------QEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLK 405
            TLRLLF         K D F G+ P GS++QAF MEFI+TFYLMF+ISGVATDNRAIGELAGLA+GSTVLLNV+ A P++ ASMNP RSLGPA+V   YKG+WIY+VAP LGA AGAWVYN VRYTDKPLREITKS SFLK
Sbjct:  149 TLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFTMEFIVTFYLMFIISGVATDNRAIGELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPALVYGCYKGIWIYLVAPTLGAIAGAWVYNTVRYTDKPLREITKSGSFLK 289          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP13_ORYSJ (Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 5.082e-51
Identity = 93/138 (67.39%), Postives = 115/138 (83.33%), Query Frame = 1
Query:    7 LRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGRS 420
            LR LF    + F GT PAGS++Q+  MEFIITFYLMFV+SGVATDNRAIGELAGLAVG+TVL+NV+FAGPI+GASMNPAR++GPAI+  +Y G+W+YI  P  GA AGAW YN++R+TDKPLREIT +ASF++   R+
Sbjct:  149 LRALFGGAPEHFFGTAPAGSDVQSLAMEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLVNVLFAGPISGASMNPARTIGPAIILGRYTGIWVYIAGPVFGAVAGAWAYNLIRFTDKPLREITMTASFIRSTRRN 286          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP12_ORYSJ (Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica GN=NIP1-2 PE=2 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 4.922e-46
Identity = 88/144 (61.11%), Postives = 113/144 (78.47%), Query Frame = 1
Query:    4 TLRLLF------QEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGR 417
            TLR++F         +  F GT PAGS  QA  +EF+I+F+LMFV+SGVATDNRAIGELAGLAVG+TV +NV+FAGP+TGASMNPARSLGPA+V+ +Y G+W+Y+ AP  G   GAW YN++R+TDKPLR+I  +ASFL+ + R
Sbjct:  158 TLRVVFGGGGGGARGEHLFFGTTPAGSMAQAAALEFVISFFLMFVVSGVATDNRAIGELAGLAVGATVAVNVLFAGPVTGASMNPARSLGPAMVAGRYGGVWVYVAAPVSGTVCGAWAYNLLRFTDKPLRDIANTASFLRRSSR 301          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP41_ARATH (Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.429e-46
Identity = 89/139 (64.03%), Postives = 110/139 (79.14%), Query Frame = 1
Query:    4 TLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGRS 420
            TLRL+F+   + F GT PA S  +A V E II+F LMFVISGVATDNRA+GELAG+AVG T+++NV  AGPI+GASMNPARSLGPA+V   YK +W+YIV P LG  +G +VYN++R+TDKPLRE+TKSASFL+    S
Sbjct:  137 TLRLMFKVTPEAFFGTTPADSPARALVAEIIISFLLMFVISGVATDNRAVGELAGIAVGMTIMVNVFVAGPISGASMNPARSLGPALVMGVYKHIWVYIVGPVLGVISGGFVYNLIRFTDKPLRELTKSASFLRAVSPS 275          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP42_ARATH (Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.191e-45
Identity = 90/138 (65.22%), Postives = 108/138 (78.26%), Query Frame = 1
Query:    4 TLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKGAGR 417
            TLRL+F      F GT P  S+ QA V E II+F LMFVISGVATD+RA GELAG+AVG T++LNV  AGPI+GASMNPARSLGPAIV  +YKG+W+YIV P +G  AG +VYN +R+TDKPLRE+TKSASFL+   +
Sbjct:  137 TLRLMFNVTPKAFFGTTPTDSSGQALVAEIIISFLLMFVISGVATDSRATGELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIFAGGFVYNFMRFTDKPLRELTKSASFLRSVAQ 274          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: NIP1_NICAL (Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.859e-44
Identity = 86/135 (63.70%), Postives = 106/135 (78.52%), Query Frame = 1
Query:    1 GTLRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLK 405
            GTL LLF      + GT+P GSN Q+  +E II+F LMFVISGVATD+RAIG++AG+AVG T+ LNV  AGPI+GASMNPARS+GPAIV   Y GLW+Y+V P +G  AGA+VYN++R TDKPLRE+ KSAS L+
Sbjct:  135 GTLALLFDVTPQAYFGTVPVGSNGQSLAIEIIISFLLMFVISGVATDDRAIGQVAGIAVGMTITLNVFVAGPISGASMNPARSIGPAIVKHVYTGLWVYVVGPIIGTLAGAFVYNLIRSTDKPLRELAKSASSLR 269          
The following BLAST results are available for this feature:
BLAST of CX300349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NIP12_ARATH8.950e-5678.01Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2... [more]
NO26_SOYBN1.994e-5572.14Nodulin-26 OS=Glycine max PE=1 SV=2[more]
NIP11_ORYSJ1.292e-5471.22Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica G... [more]
NIP11_MAIZE7.091e-5368.35Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1[more]
NIP11_ARATH1.580e-5273.05Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1... [more]
NIP13_ORYSJ5.082e-5167.39Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica G... [more]
NIP12_ORYSJ4.922e-4661.11Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica G... [more]
NIP41_ARATH6.429e-4664.03Putative aquaporin NIP4-1 OS=Arabidopsis thaliana ... [more]
NIP42_ARATH3.191e-4565.22Probable aquaporin NIP4-2 OS=Arabidopsis thaliana ... [more]
NIP1_NICAL7.859e-4463.70Probable aquaporin NIP-type OS=Nicotiana alata PE=... [more]

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Properties
Property NameValue
Genbank descriptionC07009B01SK SaltLeaf1 Citrus clementina cDNA clone C07009B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300349 ID=CX300349; Name=CX300349; organism=Citrus clementina; type=EST; length=622bp
GGAACACTTCGGTTACTGTTTCAAGAAAAACAGGATCAGTTCGCAGGAAC
ACTTCCAGCTGGCTCCAATATTCAGGCGTTTGTGATGGAGTTCATTATCA
CCTTCTACCTCATGTTTGTCATATCCGGTGTCGCCACCGATAACAGAGCT
ATAGGCGAGCTTGCAGGTCTCGCTGTTGGTTCCACAGTGCTGCTTAATGT
CATGTTTGCCGGGCCAATAACAGGAGCATCAATGAACCCAGCAAGAAGCT
TGGGGCCAGCAATTGTATCAAGTCAGTACAAGGGTTTGTGGATATACATT
GTGGCGCCACCTCTTGGGGCAACTGCAGGGGCTTGGGTTTACAACATGGT
GAGATATACTGACAAGCCTTTGCGAGAGATTACAAAGAGTGCCTCTTTCT
TAAAGGGAGCTGGACGTTCTTAATCTCAGATGATTGGATTTGTTCCAATA
GTTAATAATTGATGGCTTCTGATTTGAGATTAGATGCTAATTCTGTGATT
TGTGTAAACTACAAGAGCCAAGAGGAGGACGCTGTTTTTTTTTTCAATGC
AAATCTTAACTATGTGTGAATGGCATGTACTGGACTTCAAAATGAAATGA
ACTATAATATATTAAAAAAAAA
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