CX300353

Overview
NameCX300353
Unique NameCX300353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig175 contig Ccv1_Contig175:551..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300353 vs. ExPASy Swiss-Prot
Match: TC753_ARATH (Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3 PE=1 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 6.087e-92
Identity = 158/178 (88.76%), Postives = 166/178 (93.26%), Query Frame = 3
Query:    3 FVNGAIVGERNVFQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILELGAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAKLGLVRAEYAVDHNTGTGALFFRFGERY 536
            FVNGA+VG+R VFQVDQGLGIGSKFPFFNRHQLT+T+F QL++VE+GA K PPPVLVLHGHYGGCVGDLPSYDAF LGGPYSVRGYNMGELGAARNI E+GAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPT VYRR G GSSYG G KLGLVRAEYAVDHN GTGALFFRFGERY
Sbjct:  641 FVNGAVVGQRTVFQVDQGLGIGSKFPFFNRHQLTMTKFIQLREVEQGAGKSPPPVLVLHGHYGGCVGDLPSYDAFVLGGPYSVRGYNMGELGAARNIAEVGAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPTAVYRRTGQGSSYGAGVKLGLVRAEYAVDHNNGTGALFFRFGERY 818          
BLAST of CX300353 vs. ExPASy Swiss-Prot
Match: TOC75_PEA (Protein TOC75, chloroplastic OS=Pisum sativum GN=TOC75 PE=1 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 4.823e-89
Identity = 153/178 (85.96%), Postives = 162/178 (91.01%), Query Frame = 3
Query:    3 FVNGAIVGERNVFQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILELGAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAKLGLVRAEYAVDHNTGTGALFFRFGERY 536
            FVNG IVG RN+FQVDQGLG+GS FPFFNRHQLT+T+F QL  VEEGA K PPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGE+GAARNILEL AEIRIP+K THVYAF EHG DLGSSKDVKGNPT VYRRMG GSSYG G KLGLVRAEYAVDHN+GTGA+FFRFGER+
Sbjct:  632 FVNGTIVGSRNMFQVDQGLGVGSNFPFFNRHQLTVTKFLQLMSVEEGAGKSPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGEIGAARNILELAAEIRIPIKGTHVYAFAEHGTDLGSSKDVKGNPTVVYRRMGQGSSYGAGMKLGLVRAEYAVDHNSGTGAVFFRFGERF 809          
BLAST of CX300353 vs. ExPASy Swiss-Prot
Match: TC754_ARATH (Protein TOC75-4, chloroplastic OS=Arabidopsis thaliana GN=TOC75-4 PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 6.519e-86
Identity = 147/177 (83.05%), Postives = 161/177 (90.96%), Query Frame = 3
Query:    6 VNGAIVGERNVFQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILELGAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAKLGLVRAEYAVDHNTGTGALFFRFGERY 536
            VNGA+VGE+N+FQVDQGLGIG+ FP FNRHQL+LT F QLKQVEEG++KP PPVLVLHG YGGC+GDLPSYD F LGGP SVRGY+MGELGAA+NILELGAEIRIPVKNTHVYAF EHGNDLGSSKDVKGNPT +YR+MGHGSSYG+G KLG+VRAEY V HN GTGALF RFGERY
Sbjct:  220 VNGAVVGEKNIFQVDQGLGIGNNFPLFNRHQLSLTSFIQLKQVEEGSDKPQPPVLVLHGRYGGCIGDLPSYDVFALGGPNSVRGYSMGELGAAKNILELGAEIRIPVKNTHVYAFAEHGNDLGSSKDVKGNPTGLYRKMGHGSSYGLGVKLGMVRAEYTVRHNRGTGALFLRFGERY 396          
BLAST of CX300353 vs. ExPASy Swiss-Prot
Match: TOC75_ORYSJ (Protein TOC75, chloroplastic OS=Oryza sativa subsp. japonica GN=TOC75 PE=2 SV=2)

HSP 1 Score: 301.982 bits (772), Expect = 1.272e-81
Identity = 138/178 (77.53%), Postives = 158/178 (88.76%), Query Frame = 3
Query:    3 FVNGAIVGERNVFQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILELGAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAKLGLVRAEYAVDHNTGTGALFFRFGERY 536
            FVNGA++G+R +FQ+DQGLGIGSK PFFNRHQLTLT+F  L + E+GA KP P VLVLHGHY GCVGDLPSYDAFTLGGPYSVRGY MGELGA+RN+LE+ +E+RIPV+NT+VY FVEHG DLGSSKDVKGNPTE +RR+GHGSSYG+G KLGLVR EY VDHN GTG +FFRFGER+
Sbjct:  640 FVNGAVIGDRCIFQLDQGLGIGSKNPFFNRHQLTLTKFVNLNKQEKGAGKPLPAVLVLHGHYAGCVGDLPSYDAFTLGGPYSVRGYGMGELGASRNVLEVASELRIPVRNTYVYGFVEHGTDLGSSKDVKGNPTEFFRRVGHGSSYGLGVKLGLVRGEYIVDHNAGTGTVFFRFGERF 817          
BLAST of CX300353 vs. ExPASy Swiss-Prot
Match: OEP80_ORYSJ (Outer envelope protein of 80 kDa OS=Oryza sativa subsp. japonica GN=OEP80 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.813e-11
Identity = 54/175 (30.86%), Postives = 82/175 (46.86%), Query Frame = 3
Query:   36 VFQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNIL----ELGAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAK----LGLVRAEYAVDHNTGTGALFFRFGERY 536
            VF ++QGL I  ++  FNR    L + +++           P  L+L    G   G+   ++AF +GG  SVRGY  G +G+ R+      E+   +  P++      F ++G+DL S   V G+P     + G G  YGVG +    LG +R EYA +      A  F FG  Y
Sbjct:  505 VFNIEQGLPILPEWLSFNRVTARLRQGYEIG----------PARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYAVGSGEVSCRMFGPLEGV---VFGDYGSDLSSGPKVPGDPAGARGKPGSGYGYGVGVRVDSPLGPLRLEYAFNDKQ---ARRFHFGVGY 663          
BLAST of CX300353 vs. ExPASy Swiss-Prot
Match: OEP80_ORYSI (Outer envelope protein of 80 kDa OS=Oryza sativa subsp. indica GN=OEP80 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 54/175 (30.86%), Postives = 82/175 (46.86%), Query Frame = 3
Query:   36 VFQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNIL----ELGAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAK----LGLVRAEYAVDHNTGTGALFFRFGERY 536
            VF ++QGL I  ++  FNR    L + +++           P  L+L    G   G+   ++AF +GG  SVRGY  G +G+ R+      E+   +  P++      F ++G+DL S   V G+P     + G G  YGVG +    LG +R EYA +      A  F FG  Y
Sbjct:  505 VFNIEQGLPILPEWLSFNRVTARLRQGYEIG----------PARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYAVGSGEVSCRMFGPLEGV---VFGDYGSDLSSGPKVPGDPAGARGKPGSGYGYGVGIRVDSPLGPLRLEYAFNDKQ---ARRFHFGVGY 663          
BLAST of CX300353 vs. ExPASy Swiss-Prot
Match: OEP80_ARATH (Outer envelope protein of 80 kDa OS=Arabidopsis thaliana GN=OEP80 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.367e-11
Identity = 54/170 (31.76%), Postives = 80/170 (47.06%), Query Frame = 3
Query:   39 FQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLV-LHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILELGAEIRIPVKN-THVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAK----LGLVRAEYAV-DHNTGTGALFFRFG 527
            F ++QGL +  ++  FNR            +  +G +  P   L  L G  G  VG    ++AF +GG  SVRGY  G +G+ R+ +    E+  PV+       F ++G D+GS   V G+P     + G G  YG+G +    LG +R EYA  D + G     F FG
Sbjct:  573 FNMEQGLPVLPEWLCFNR---------VTGRARKGIHIGPARFLFSLSG--GHVVGKFSPHEAFVIGGTNSVRGYEEGAVGSGRSYVVGSGELSFPVRGPVEGVIFTDYGTDMGSGSTVPGDPAGARLKPGSGYGYGLGVRVDSPLGPLRLEYAFNDQHAGR----FHFG 727          
The following BLAST results are available for this feature:
BLAST of CX300353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TC753_ARATH6.087e-9288.76Protein TOC75-3, chloroplastic OS=Arabidopsis thal... [more]
TOC75_PEA4.823e-8985.96Protein TOC75, chloroplastic OS=Pisum sativum GN=T... [more]
TC754_ARATH6.519e-8683.05Protein TOC75-4, chloroplastic OS=Arabidopsis thal... [more]
TOC75_ORYSJ1.272e-8177.53Protein TOC75, chloroplastic OS=Oryza sativa subsp... [more]
OEP80_ORYSJ1.813e-1130.86Outer envelope protein of 80 kDa OS=Oryza sativa s... [more]
OEP80_ORYSI2.367e-1130.86Outer envelope protein of 80 kDa OS=Oryza sativa s... [more]
OEP80_ARATH2.367e-1131.76Outer envelope protein of 80 kDa OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC07009B05SK SaltLeaf1 Citrus clementina cDNA clone C07009B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300353 ID=CX300353; Name=CX300353; organism=Citrus clementina; type=EST; length=556bp
AGTTTGTTAATGGAGCTATAGTTGGTGAGAGGAATGTATTTCAGGTGGAC
CAAGGCCTTGGTATTGGCAGCAAGTTTCCGTTCTTTAATCGCCATCAATT
GACGTTGACGCGATTTTTCCAATTGAAGCAAGTTGAAGAAGGTGCTAATA
AACCACCACCTCCTGTTCTAGTACTTCATGGCCACTATGGAGGTTGCGTT
GGAGACCTACCAAGTTATGATGCATTTACACTTGGGGGTCCCTATTCAGT
TAGGGGTTACAATATGGGTGAGTTAGGTGCTGCTAGAAACATTCTAGAGC
TAGGAGCTGAGATCCGGATTCCTGTGAAAAACACGCATGTGTATGCTTTT
GTTGAGCATGGCAATGATCTAGGAAGTTCAAAGGATGTCAAGGGGAACCC
GACAGAGGTCTACAGGCGAATGGGTCACGGTTCATCGTATGGTGTTGGTG
CCAAGCTGGGGCTAGTGCGAGCTGAGTATGCTGTTGATCATAACACTGGA
ACTGGTGCCTTATTCTTCAGATTTGGAGAGAGATACTGAAGTGCAATTAG
GCTTTA
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