CX300354

Overview
NameCX300354
Unique NameCX300354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig56 contig Ccv1_Contig56:50..393. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300354 vs. ExPASy Swiss-Prot
Match: PST2_ARATH (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBT PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = 2
Query:   71 SMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGKMELVFASTLAAACSIAKVAMAESEEPKRGTPDANKKYAPVCVTMPT 343
            ++AK P+AT  +R  L VV  + S    ++ +    K++SS+  + +L+F +  AA CS+AKVAMAE EEPKRGT  A KKYA VCVTMPT
Sbjct:   13 AVAKVPSATGGRR--LSVVRASTSDNTPSLEV----KEQSSTTMRRDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPT 97          
BLAST of CX300354 vs. ExPASy Swiss-Prot
Match: PST2_GOSHI (Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum GN=PSBT PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.349e-12
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 2
Query:   59 LLPTSMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGKMELVFASTLAAACSIAKVAMAESEEPKRGTPDANKKYAPVCVTMPT 343
            L  T++ K       +R  L+V   A  ++ E+V M  + K E + NG+ E++FA+  AA CS+A VA AE   PKRG+ +A K YAPVCVTMPT
Sbjct:   11 LSTTNLTKGSPRITQRR--LVVANAAKGAQVESVQMSGERKTEGN-NGRREMMFAAAAAAICSVAGVATAE---PKRGSAEAKKAYAPVCVTMPT 99          
The following BLAST results are available for this feature:
BLAST of CX300354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PST2_ARATH2.224e-1549.45Photosystem II 5 kDa protein, chloroplastic OS=Ara... [more]
PST2_GOSHI1.349e-1244.21Photosystem II 5 kDa protein, chloroplastic OS=Gos... [more]
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Properties
Property NameValue
Genbank descriptionC07009B08SK SaltLeaf1 Citrus clementina cDNA clone C07009B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300354 ID=CX300354; Name=CX300354; organism=Citrus clementina; type=EST; length=344bp
ATCACTTGCAACAAAGTCAGCAGCAAACATGGCTTTTATGACCATGGCAG
CAGCCTCATTACTGCCCACAAGCATGGCCAAAAACCCAGCAGCAACAAGA
GCGAAGAGAGGAGGCCTCATCGTTGTGGCCAAGGCTGCATCATCAAAAGC
TGAAAATGTGAGCATGGAATTCAAGAACAAGGATGAGAGCAGCAGCAACG
GAAAAATGGAGCTTGTGTTTGCATCAACACTTGCAGCAGCTTGTTCCATT
GCAAAAGTTGCAATGGCTGAATCTGAGGAGCCCAAACGAGGGACCCCAGA
TGCTAATAAGAAGTATGCTCCTGTTTGTGTCACAATGCCTACTG
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