CX300355

Overview
NameCX300355
Unique NameCX300355
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length306
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:1050..1355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300355 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.701e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  213 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CX300355 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.701e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  213 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CX300355 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.701e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of CX300355 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 3.701e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  207 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261
[Close]
BLAST of CX300355 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 3.701e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of CX300355 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.312e-26
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  220 VKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
[Close]
BLAST of CX300355 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.312e-26
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  224 VKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of CX300355 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.312e-26
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  224 VKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of CX300355 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.312e-26
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  211 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of CX300355 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.312e-26
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  152 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206
The following BLAST results are available for this feature:
BLAST of CX300355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB24_TOBAC3.701e-26100.00Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB23_NICPL3.701e-26100.00Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_TOBAC3.701e-26100.00Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_ORYSJ3.701e-26100.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ3.701e-26100.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2B_PINSY6.312e-2698.18Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PYRPY6.312e-2698.18Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY6.312e-2698.18Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB29_MAIZE6.312e-2698.18Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB22_CUCSA6.312e-2698.18Chlorophyll a-b binding protein of LHCII type 1 (F... [more]

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Properties
Property NameValue
Genbank descriptionC07009B09SK SaltLeaf1 Citrus clementina cDNA clone C07009B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300355 ID=CX300355; Name=CX300355; organism=Citrus clementina; type=EST; length=306bp
GGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTT
TCTTTGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCC
GACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAA
CTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCG
GTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATT
TGAGTTGTGATTATTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAA
AAAAAA
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