CX300361

Overview
NameCX300361
Unique NameCX300361
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length397
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig824 contig Ccv1_Contig824:244..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300361 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.897e-23
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 2
Query:    2 RRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 208
            RRGTDVFKALALGA  + IGRPVV+ LAA+GE GVR+V++ML+DEFELTMAL+GC S+K I+RNH+ TE
Sbjct:  289 RRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTE 357          
BLAST of CX300361 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.438e-22
Identity = 49/69 (71.01%), Postives = 60/69 (86.96%), Query Frame = 2
Query:    2 RRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 208
            RRGTDVFKALALGA  + IGRPVV+ LAA+GE GV++V++ML+DEFELTMAL+GC S+  ITRNH+ TE
Sbjct:  289 RRGTDVFKALALGASGIFIGRPVVFALAAEGEAGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTE 357          
BLAST of CX300361 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.541e-21
Identity = 46/69 (66.67%), Postives = 60/69 (86.96%), Query Frame = 2
Query:    2 RRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 208
            RRGTDVFKALALGA  V IGRPVV+ LAA+GE GV++V++M++DEFELTMAL+GC S+K I+R+H+  +
Sbjct:  289 RRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAAD 357          
BLAST of CX300361 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.375e-17
Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 2
Query:    2 RRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVR 202
            R+GTDV KALALGA+AV +GRP+V+GLA +GE GV+ V+E+LK+EF L MAL+GC +VK I +  VR
Sbjct:  295 RKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVR 361          
BLAST of CX300361 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.102e-17
Identity = 41/67 (61.19%), Postives = 55/67 (82.09%), Query Frame = 2
Query:    2 RRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVR 202
            R+GTDV KALALGA+AV +GRP+++GLA +GE GV+ V+E+LK+EF L MAL+GC +VK I +  VR
Sbjct:  295 RKGTDVLKALALGAKAVFVGRPIIWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVR 361          
BLAST of CX300361 vs. ExPASy Swiss-Prot
Match: HAOX2_HUMAN (Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.978e-16
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = 2
Query:    2 RRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVR 202
            R G DV KALALGA+ + +GRP+++GLA KGE+GV+ V+ +L +EF  +MALTGC SV  I RN V+
Sbjct:  281 RTGNDVLKALALGAKCIFLGRPILWGLACKGEHGVKEVLNILTNEFHTSMALTGCRSVAEINRNLVQ 347          
BLAST of CX300361 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.952e-15
Identity = 36/67 (53.73%), Postives = 52/67 (77.61%), Query Frame = 2
Query:    2 RRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVR 202
            R G DV KALALGA+ V +GRP+++GLA KGE+GV+ V+++LK+EF  +M LTGC SV  I ++ ++
Sbjct:  283 RTGNDVLKALALGAKCVFVGRPILWGLAYKGEHGVKEVLDILKNEFHTSMTLTGCRSVAEINQDLIQ 349          
BLAST of CX300361 vs. ExPASy Swiss-Prot
Match: HAOX2_MOUSE (Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.210e-14
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = 2
Query:    2 RRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHIT 187
            R G DV KALALGA+ + +GRP+++GLA KGE+GV+ V+++LK+E    MAL+GC SV  I+
Sbjct:  283 RTGNDVLKALALGARCIFLGRPIIWGLACKGEDGVKEVLDILKEELHTCMALSGCRSVAEIS 344          
BLAST of CX300361 vs. ExPASy Swiss-Prot
Match: MDLB_PSEPU ((S)-mandelate dehydrogenase OS=Pseudomonas putida GN=mdlB PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.192e-14
Identity = 34/69 (49.28%), Postives = 52/69 (75.36%), Query Frame = 2
Query:    2 RRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHITRNHVRTE 208
            RRG+D+ KALALGA+AVL+GR  +YGLAA+GE GV  V+ +LK + + T+A  GCP +  ++ ++++ E
Sbjct:  307 RRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNE 375          
BLAST of CX300361 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.054e-13
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 2
Query:    2 RRGTDVFKALALGAQAVLIGRPVVYGLAAKGENGVRRVIEMLKDEFELTMALTGCPSVKHIT 187
            R GTDV KALALGA+ + +GRP+++GLA KGE+GV+ V+++L  E    M L+GC SV  I+
Sbjct:  283 RTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEIS 344          
The following BLAST results are available for this feature:
BLAST of CX300361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
GOX2_ARATH2.897e-2372.46Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX1_ARATH1.438e-2271.01Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
GOX_SPIOL3.541e-2166.67Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
HAOX1_HUMAN2.375e-1762.69Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX1_MOUSE3.102e-1761.19Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
HAOX2_HUMAN9.978e-1656.72Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2... [more]
HAOX2_BOVIN4.952e-1553.73Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
HAOX2_MOUSE3.210e-1454.84Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2... [more]
MDLB_PSEPU4.192e-1449.28(S)-mandelate dehydrogenase OS=Pseudomonas putida ... [more]
HAOX2_RAT6.054e-1353.23Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]

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Properties
Property NameValue
Genbank descriptionC07009C05SK SaltLeaf1 Citrus clementina cDNA clone C07009C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300361 ID=CX300361; Name=CX300361; organism=Citrus clementina; type=EST; length=397bp
GCGGCGAGGAACAGATGTTTTCAAGGCATTGGCCCTCGGTGCACAAGCTG
TACTTATTGGAAGGCCTGTAGTCTACGGCCTTGCTGCAAAAGGGGAAAAT
GGGGTGAGACGCGTCATCGAAATGCTGAAGGATGAGTTTGAGTTGACCAT
GGCCCTTACTGGCTGTCCTAGTGTGAAACATATTACCAGGAACCATGTGA
GAACTGAGCAGGAGAGAATCCATTCGATGCTGTAATATTATTCTGTTGCA
GAAATGTCTAAGGGTGCGTTTGGCACACTCTATTGTATTATGTTGTATTG
TATTATTTTAATACAGTTATATTGTATTATTTTGTATTGTATTAGTATTG
AATTATAATAATATTGTACAACGTTTGGTAAAAAAAAAAAAAAAAAA
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