CX300363

Overview
NameCX300363
Unique NameCX300363
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300363 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.550e-23
Identity = 54/122 (44.26%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 GLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYLQLQQSNQLKGKSCLDHVKV 366
            GL  ++  N+  GLH++ D KW+P+ P  G+FVVNIGD +EI+SNG YKS+ HRAV+N    R+S+A  H P   T +GP  DL+  +     Y+ I Y +YL    + +L GKS LD +K+
Sbjct:  233 GLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAFHDPEYGTKIGPLPDLV--KENGVKYKTIDYEDYLIRSSNIKLDGKSLLDQMKL 352          
BLAST of CX300363 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.282e-22
Identity = 52/121 (42.98%), Postives = 80/121 (66.12%), Query Frame = 1
Query:    7 LTILMQ-NDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYLQLQQSNQLKGKSCLDHVKV 366
            LT+LMQ ND  GL ++ DGKW+PV P P +F+VNIGD +EI++NG Y+S+ HR VVN +  R+S+AT H   +   VGPA+ L++ + +   ++ +  +EY     S  L GK+ LD +++
Sbjct:  239 LTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQ-KVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358          
BLAST of CX300363 vs. ExPASy Swiss-Prot
Match: FLS_CITUN (Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:    7 LTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREY 306
            LT+L+ N+  GL V  D +WI     P + V++IGD +EILSNGKYK+VLHR  VN   TR+S      PP DTVVGP   L+D+EN PP Y+  K+++Y
Sbjct:  227 LTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDEN-PPKYKAKKFKDY 325          
BLAST of CX300363 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.490e-19
Identity = 50/125 (40.00%), Postives = 69/125 (55.20%), Query Frame = 1
Query:    1 GLLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGP---PLDTVVGPAQDLLDNENRPPLYRGIKYREYLQLQQSNQLKGKSCLDHVKV 366
            G +TIL+Q+D  GL V H   W+ V P PGS VVNIGD +++LSN KY SV HRA+ N   +R+S+    G        + GP  +LL  +N PP YR    +++     +  L G S L   K+
Sbjct:  240 GFVTILLQDDMGGLQVLHQNHWVDVPPTPGSLVVNIGDFLQLLSNDKYLSVEHRAISNNVGSRMSITCFFGESPYQSSKLYGPITELLSEDN-PPKYRATTVKDHTSYLHNRGLDGTSALSRYKI 363          
BLAST of CX300363 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.448e-18
Identity = 54/117 (46.15%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    4 LLTILMQNDHVGLHV-RHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYLQLQQSNQLKGKSCL 351
            LLTIL QN+  GL V R D  W+ V P PGS VVN+GD   ILSNG +KSVLHRA VN    R+SVA   GP  D  + P   L+ +    PLY+ + ++EYL+ + ++  K  S +
Sbjct:  237 LLTILYQNNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQTRARLSVAFLWGPQSDIKISPVPKLV-SPVESPLYQSVTWKEYLRTKATHFNKALSMI 352          
BLAST of CX300363 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-18
Identity = 43/104 (41.35%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    4 LLTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYLQL 315
            L+T+L+     GL V + G WI V+P P +FVVN G  +E+++NG  KS+ HRA+ N    R SVAT   P  + ++GPA++ L  EN PP YR   +R+++++
Sbjct:  214 LITLLLPGAVNGLEVSYKGDWIKVDPAPNAFVVNFGQQLEVVTNGLLKSIEHRAMTNSALARTSVATFIMPTQECLIGPAKEFLSKEN-PPCYRTTMFRDFMRI 316          
BLAST of CX300363 vs. ExPASy Swiss-Prot
Match: FLS_MALDO (Flavonol synthase/flavanone 3-hydroxylase OS=Malus domestica GN=FLS PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 49/101 (48.51%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    7 LTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYL 309
            +TIL+ ND  GL    DG+W  V   P + V++IGD MEI+SNGKY SVLHR  VN   TRIS      PP D VVGP   L++  N+P  Y+  KY +Y+
Sbjct:  229 VTILVPNDVQGLQACKDGRWYDVKYIPNALVIHIGDQMEIMSNGKYTSVLHRTTVNKDKTRISWPVFLEPPADHVVGPHPQLVNAVNQPK-YKTKKYGDYV 328          
BLAST of CX300363 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 46/116 (39.66%), Postives = 71/116 (61.21%), Query Frame = 1
Query:    1 GLLTILMQNDHV-GLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNE-NRPPLYRGIKYREYLQLQQSNQLKGK 342
            G L +L Q+D V GLHV  DGKW+ V P   S V+N+GD +E+++NGKYKSV+HR +      R+S+A+ + P  D V+ PA  L++ E  +  LY    + +Y++L    + + K
Sbjct:  182 GGLILLFQDDKVSGLHVLKDGKWVDVPPMHHSIVINLGDQLEVITNGKYKSVMHRVIAQEDGNRMSIASFYNPGNDAVIYPAPALVEGEQEKTKLYPKFVFDDYMKLYVGLKFQAK 297          
BLAST of CX300363 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.731e-17
Identity = 48/103 (46.60%), Postives = 65/103 (63.11%), Query Frame = 1
Query:    4 LLTILMQNDHVGLHV-RHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYL 309
            L+TIL QN+  GL V R D  W+   P PGS VVN+GD + IL+NG + SVLHRA VN   +R S+A   GPP D ++ P   L+D   + PLY  + +++YL
Sbjct:  230 LMTILYQNNTAGLQVFRDDVGWVTAPPVPGSLVVNVGDLLHILTNGIFPSVLHRARVNHVRSRFSMAYLWGPPSDIMISPLPKLVD-PLQSPLYPSLTWKQYL 331          
BLAST of CX300363 vs. ExPASy Swiss-Prot
Match: FLS_PETHY (Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.567e-17
Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    7 LTILMQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAHGPPLDTVVGPAQDLLDNENRPPLYRGIKYREYL 309
            +TIL+ N+  GL V  DG W  V   P + +V+IGD +EILSNGKYKSV HR  VN   TR+S      PP +  VGP   LL   N PP ++  KY++Y+
Sbjct:  240 ITILVPNEVQGLQVFKDGHWYDVKYIPNALIVHIGDQVEILSNGKYKSVYHRTTVNKDKTRMSWPVFLEPPSEHEVGPIPKLLSEAN-PPKFKTKKYKDYV 339          
The following BLAST results are available for this feature:
BLAST of CX300363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
NCS1_COPJA2.550e-2344.26S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
SRG1_ARATH6.282e-2242.98Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
FLS_CITUN1.185e-2050.00Flavonol synthase/flavanone 3-hydroxylase OS=Citru... [more]
ACCH3_SOLLC8.490e-1940.001-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
G3OX1_ARATH1.448e-1846.15Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
IDS3_HORVU4.214e-1841.352'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
FLS_MALDO5.503e-1848.51Flavonol synthase/flavanone 3-hydroxylase OS=Malus... [more]
ACCO3_CUCME5.503e-1839.661-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
G3OX2_ARATH2.731e-1746.60Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
FLS_PETHY3.567e-1746.53Flavonol synthase/flavanone 3-hydroxylase OS=Petun... [more]

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Properties
Property NameValue
Genbank descriptionC07009C09SK SaltLeaf1 Citrus clementina cDNA clone C07009C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300363 ID=CX300363; Name=CX300363; organism=Citrus clementina; type=EST; length=541bp
GGCCTCTTAACCATCCTTATGCAGAATGACCATGTAGGTCTTCACGTACG
GCACGATGGCAAATGGATTCCCGTCAATCCTCCACCCGGCTCTTTCGTAG
TCAACATAGGAGACCACATGGAGATACTAAGTAACGGAAAGTACAAAAGC
GTGTTGCACAGAGCAGTAGTGAACGGCAAAGCAACAAGAATCTCCGTTGC
AACGGCACACGGGCCTCCTCTTGACACGGTCGTGGGCCCTGCTCAGGATT
TGCTTGACAATGAGAACCGACCCCCGTTGTATCGTGGGATCAAATATAGA
GAGTATTTGCAGCTTCAACAGAGCAATCAACTGAAAGGGAAATCCTGCTT
GGACCACGTCAAAGTCAATATCAATGATACGTGTTGCAAATAAATTTGTT
TAATTATCACTTTCCAGATGAAATGATTGTGATGTGCTGCTTTATAATTT
ATTTGTAATAAGAGATGTAAATTAAATAAATTCTATTACTTGTTATGTTA
ATGGAAGATAATTGATTAAACTCTAAAAAAAAAAAAAAAAA
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