CX300368

Overview
NameCX300368
Unique NameCX300368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length571
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1683 contig Ccv1_Contig1683:70..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300368 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 5.765e-88
Identity = 147/185 (79.46%), Postives = 170/185 (91.89%), Query Frame = 1
Query:   16 TLLISIAISSLMVASASNFYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNAD 570
            T+++++  S ++ + ++NF +D +ITWGDGRG+I NNG LL+LSLDKASGSGFQSK+EYLFGKIDMQ+KLV GNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFT GKGDREQQF LWFDPT+DFHTYS+LWNPQRI+F VDG+PIREFKN+ES G LFPKNQPMR+YSSLWNA+
Sbjct:    8 TIVVALLASFMICSVSANFQRDVEITWGDGRGQITNNGDLLTLSLDKASGSGFQSKNEYLFGKIDMQIKLVAGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTQGKGDREQQFKLWFDPTSDFHTYSILWNPQRIIFSVDGTPIREFKNMESQGTLFPKNQPMRMYSSLWNAE 192          
BLAST of CX300368 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2)

HSP 1 Score: 308.531 bits (789), Expect = 1.469e-83
Identity = 144/186 (77.42%), Postives = 165/186 (88.71%), Query Frame = 1
Query:   13 FTLLISIAISSLMVASASNFYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNAD 570
            FT L+  A S     SA++F  D ++ WG+GRGKILNNGQLL+LSLDK+SGSGFQSK+EYLFGKIDMQ+KLVPGNSAGTVT +YLKS GSTWDEIDFEFLGN+SGDPYTLHTNV+T GKGD+EQQFHLWFDPTA+FHTYS+LWNPQRI+  VD +PIREFKN ES GVLFPKN+PMR+Y+SLWNAD
Sbjct:    9 FTTLLVAAFS----VSAADFNTDVNVAWGNGRGKILNNGQLLTLSLDKSSGSGFQSKTEYLFGKIDMQIKLVPGNSAGTVTTFYLKSEGSTWDEIDFEFLGNMSGDPYTLHTNVYTQGKGDKEQQFHLWFDPTANFHTYSILWNPQRIILTVDDTPIREFKNYESLGVLFPKNKPMRMYASLWNAD 190          
BLAST of CX300368 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 307.76 bits (787), Expect = 2.506e-83
Identity = 143/188 (76.06%), Postives = 163/188 (86.70%), Query Frame = 1
Query:   16 TLLISIAISSLMVAS---ASNFYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNAD 570
            +LL ++ +S+  + S   A  F  +FDITWGDGRGK+LNNG+LL+LSLD+ASGSGFQ+K EYLFGKIDMQLKLVPGNSAGTVTAYYLKS G TWDEIDFEFLGNL+GDPYT+HTNV+T GKGDREQQFHLWFDPTADFHTYSVLWNP  IVF VD  P+REFKNL+  G+ +PK QPMR+YSSLWNAD
Sbjct:    9 SLLFTLTVSTTTLFSPVFAGTFDTEFDITWGDGRGKVLNNGELLTLSLDRASGSGFQTKKEYLFGKIDMQLKLVPGNSAGTVTAYYLKSKGDTWDEIDFEFLGNLTGDPYTMHTNVYTQGKGDREQQFHLWFDPTADFHTYSVLWNPHHIVFMVDDIPVREFKNLQHMGIQYPKLQPMRLYSSLWNAD 196          
BLAST of CX300368 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 7.293e-83
Identity = 140/186 (75.27%), Postives = 167/186 (89.78%), Query Frame = 1
Query:   16 TLLISIAISSLMVASAS-NFYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNAD 570
            T L+ + +S ++ +S S NF +D +ITWGDGRG+I NNG+LL+LSLDK+SGSGFQSK+EYLFGK+ MQ+KLVPGNSAGTVT  YLKSPG+TWDEIDFEFLGN SG+PYTLHTNV+T GKGD+EQQF LWFDPTA+FHTY++LWNPQRI+F VDG+PIREFKN+ES G LFPKN+PMR+YSSLWNAD
Sbjct:    4 TYLLPLFLSLIITSSVSANFQRDVEITWGDGRGQIKNNGELLTLSLDKSSGSGFQSKNEYLFGKVSMQMKLVPGNSAGTVTTLYLKSPGTTWDEIDFEFLGNSSGEPYTLHTNVYTQGKGDKEQQFKLWFDPTANFHTYTILWNPQRIIFTVDGTPIREFKNMESLGTLFPKNKPMRMYSSLWNAD 189          
BLAST of CX300368 vs. ExPASy Swiss-Prot
Match: XTH21_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 4.002e-81
Identity = 135/185 (72.97%), Postives = 158/185 (85.41%), Query Frame = 1
Query:   16 TLLISIAISSLMVASASNFYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNAD 570
            ++ + + +S L+V    +F QD DITWGDGRG ILNNG LL+L LD++SGSGFQSK+EYL+GK+DMQ+KLVPGNSAGTVT +YLKS G TWDEIDFEFLGN+SGDPY +HTNV+T GKGDREQQF+LWFDPTA FH YS+LWNP  IVFY+DG PIREFKNLE  GV +PKNQPMR+Y SLWNAD
Sbjct:   10 SISLFLGLSILLVVHGKDFNQDIDITWGDGRGNILNNGTLLNLGLDQSSGSGFQSKAEYLYGKVDMQIKLVPGNSAGTVTTFYLKSQGLTWDEIDFEFLGNVSGDPYIVHTNVYTQGKGDREQQFYLWFDPTAAFHNYSILWNPSHIVFYIDGKPIREFKNLEVLGVAYPKNQPMRMYGSLWNAD 194          
BLAST of CX300368 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 3.745e-79
Identity = 136/184 (73.91%), Postives = 154/184 (83.70%), Query Frame = 1
Query:   19 LLISIAISSLMVASASNFYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNAD 570
            +L+ I +S+++   A +FYQDFD+TWG  R KI N GQLLSLSLDK SGSGF+SK EYLFG+IDMQLKLV GNSAGTVTAYYL S G T DEIDFEFLGNLSGDPY LHTN+FT GKG+REQQF+LWFDPT +FHTYS++W PQ I+F VD +PIR FKN E  GV FPKNQPMRIYSSLWNAD
Sbjct:   15 MLVGIVVSTMVATCAGSFYQDFDLTWGGDRAKIFNGGQLLSLSLDKVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNLSGDPYILHTNIFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNTPIRVFKNAEPLGVPFPKNQPMRIYSSLWNAD 198          
BLAST of CX300368 vs. ExPASy Swiss-Prot
Match: XTH14_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 14 OS=Arabidopsis thaliana GN=XTH14 PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.574e-77
Identity = 136/187 (72.73%), Postives = 153/187 (81.82%), Query Frame = 1
Query:   19 LLISIAISS---LMVASASNFYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNAD 570
            LL+S+ ++    ++ ASA NFY+ FDITWG+GR  I  NGQLL+ +LDK SGSGFQSK EYLFGKIDM+LKLV GNSAGTVTAYYL S G+ WDEIDFEFLGN +G PYT+HTNVFT GKGDRE QF LWFDPTADFHTY+V WNP  I+F VDG PIR FKN E NGV +PKNQPMRIYSSLW AD
Sbjct:   10 LLLSLLLAIGFFVVAASAGNFYESFDITWGNGRANIFENGQLLTCTLDKVSGSGFQSKKEYLFGKIDMKLKLVAGNSAGTVTAYYLSSKGTAWDEIDFEFLGNRTGHPYTIHTNVFTGGKGDREMQFRLWFDPTADFHTYTVHWNPVNIIFLVDGIPIRVFKNNEKNGVAYPKNQPMRIYSSLWEAD 196          
BLAST of CX300368 vs. ExPASy Swiss-Prot
Match: XTH13_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS=Arabidopsis thaliana GN=XTH13 PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 2.272e-76
Identity = 133/189 (70.37%), Postives = 157/189 (83.07%), Query Frame = 1
Query:    4 SKNFTLLISIAISSLMVASASNFYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNAD 570
            +K   LL+S+ +  L+  SA +FY +FDITWG+GR  I+ +GQLL+ +LDK SGSGFQSK EYLFGKIDM++KLV GNSAGTVTAYYL S G TWDEIDFEFLGN++G PY LHTNVFT GKG+RE QF+LWFDPTADFHTY+VLWNP  I+F VDG PIR FKN E+NGV +PK+QPM+IYSSLW AD
Sbjct:    6 TKQSLLLLSLLL--LISLSAGSFYDNFDITWGNGRANIVESGQLLTCTLDKISGSGFQSKKEYLFGKIDMKMKLVAGNSAGTVTAYYLSSKGETWDEIDFEFLGNVTGQPYVLHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEAD 192          
BLAST of CX300368 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.473e-75
Identity = 132/189 (69.84%), Postives = 154/189 (81.48%), Query Frame = 1
Query:    4 SKNFTLLISIAISSLMVASASNFYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNAD 570
            +K   LL++  +  + VA+ S FY  FDITWG GR  I  +GQLL+ +LDK SGSGFQSK EYLFGKIDM++KLVPGNSAGTVTAYYL S G TWDEIDFEFLGN++G PY +HTNVFT GKG+RE QF+LWFDPTADFHTY+VLWNP  I+F VDG PIR FKN E+NGV +PK+QPM+IYSSLW AD
Sbjct:    6 TKQSPLLLASLLILIGVATGS-FYDSFDITWGAGRANIFESGQLLTCTLDKTSGSGFQSKKEYLFGKIDMKIKLVPGNSAGTVTAYYLSSKGETWDEIDFEFLGNVTGQPYVIHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEAD 193          
BLAST of CX300368 vs. ExPASy Swiss-Prot
Match: XTH20_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 5.597e-75
Identity = 125/171 (73.10%), Postives = 150/171 (87.72%), Query Frame = 1
Query:   61 ASNFYQDFDITWGDGRGKILNN-GQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNAD 570
            A +F++D  I WGDGRGKIL+N G LLSLSLDK SGSGFQS  E+L+GK+++Q+KLVPGNSAGTVT +YLKSPG+TWDEIDFEFLGN+SG PYTLHTNV+T G GD+EQQFHLWFDPT DFHTY ++WNPQR++F +DG PIREFKN E+ GV FPK+QPMR+Y+SLW A+
Sbjct:   26 AGSFHKDVQIHWGDGRGKILDNVGNLLSLSLDKFSGSGFQSHQEFLYGKVEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTVDFHTYCIIWNPQRVIFTIDGIPIREFKNSEALGVPFPKHQPMRLYASLWEAE 196          
The following BLAST results are available for this feature:
BLAST of CX300368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
XTH23_ARATH5.765e-8879.46Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH24_ARATH1.469e-8377.42Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH25_ARATH2.506e-8376.06Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH22_ARATH7.293e-8375.27Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH21_ARATH4.002e-8172.97Probable xyloglucan endotransglucosylase/hydrolase... [more]
BRU1_SOYBN3.745e-7973.91Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]
XTH14_ARATH1.574e-7772.73Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH13_ARATH2.272e-7670.37Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH12_ARATH1.473e-7569.84Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH20_ARATH5.597e-7573.10Xyloglucan endotransglucosylase/hydrolase protein ... [more]

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Properties
Property NameValue
Genbank descriptionC07009D03SK SaltLeaf1 Citrus clementina cDNA clone C07009D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300368 ID=CX300368; Name=CX300368; organism=Citrus clementina; type=EST; length=571bp
TACTCAAAAAATTTTACCCTGCTCATCTCTATAGCAATCAGCTCTTTGAT
GGTTGCTTCTGCTAGTAATTTCTACCAAGACTTTGATATCACTTGGGGAG
ATGGCCGTGGTAAGATACTCAACAACGGCCAGCTTCTCTCCCTCTCCCTT
GACAAAGCCTCAGGCTCAGGCTTCCAGTCCAAGAGCGAGTACCTTTTTGG
CAAAATCGACATGCAACTCAAGCTTGTCCCTGGCAATTCTGCCGGCACAG
TCACCGCCTACTACTTAAAATCACCAGGATCAACATGGGATGAGATAGAC
TTCGAATTCTTGGGGAATTTAAGTGGTGATCCTTATACTCTTCATACTAA
TGTGTTCACAAATGGCAAAGGTGACAGAGAGCAACAATTCCACCTCTGGT
TTGACCCCACTGCTGACTTTCACACCTATTCCGTTCTCTGGAATCCCCAA
CGTATTGTCTTCTATGTTGATGGCTCGCCAATTAGAGAGTTCAAGAACTT
GGAATCAAACGGCGTACTCTTTCCCAAAAACCAGCCGATGAGGATTTACT
CGAGTCTCTGGAACGCCGATG
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