CX300370

Overview
NameCX300370
Unique NameCX300370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length336
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:1021..1356. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 3.441e-32
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  197 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 3.441e-32
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  201 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.869e-32
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  142 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.869e-32
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  191 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.665e-32
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  203 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.001e-31
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  203 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.001e-31
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            +DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  203 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.001e-31
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  202 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.001e-31
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            +DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  203 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.001e-31
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            +DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  201 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
The following BLAST results are available for this feature:
BLAST of CX300370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB22_ORYSJ3.441e-32100.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ3.441e-32100.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_CUCSA5.869e-3298.46Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA5.869e-3298.46Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_PETSP7.665e-3298.46Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB2G_SOLLC1.001e-3198.46Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB24_TOBAC1.001e-3198.46Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB24_PETSP1.001e-3198.46Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_NICPL1.001e-3198.46Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_TOBAC1.001e-3198.46Chlorophyll a-b binding protein 21, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC07009D05SK SaltLeaf1 Citrus clementina cDNA clone C07009D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300370 ID=CX300370; Name=CX300370; organism=Citrus clementina; type=EST; length=336bp
GATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGG
AAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGCCATTGTCA
CCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTC
AATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGC
TTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAA
TCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAA
ATGCTTCAATTTGATCTTAAAAAAAAAAAAAAAAAA
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