CX300371

Overview
NameCX300371
Unique NameCX300371
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10079 contig Ccv1_Contig10079:230..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300371 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.439e-24
Identity = 50/61 (81.97%), Postives = 58/61 (95.08%), Query Frame = 2
Query:    2 NKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTA 184
            + E DGS+IQ+ALAEWTGQ+TVPNVFIG KHIGGCD+TTALHREGKL+PLLTEAGA+AKT+
Sbjct:   46 DSEKDGSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLPLLTEAGAIAKTS 106          
BLAST of CX300371 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.802e-23
Identity = 47/57 (82.46%), Postives = 54/57 (94.74%), Query Frame = 2
Query:    2 NKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 172
            + ESDGSD+Q+ALAEWTGQ+TVPNVFIGGKHIGGCD TT +H+EGKL+PLLTEAGAV
Sbjct:   46 DSESDGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLLTEAGAV 102          
BLAST of CX300371 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.465e-22
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 2
Query:    8 ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTA 184
            ESDGS++QSALAEWTGQ+TVPNVFI GKHIGGCD T AL+ EGKLVPLLTEAGA+A +A
Sbjct:   48 ESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGAIASSA 106          
BLAST of CX300371 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.465e-22
Identity = 48/55 (87.27%), Postives = 53/55 (96.36%), Query Frame = 2
Query:    8 ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 172
            ESDGS+IQ+ALAEWTGQ+TVPNVFIGGKHIGGCDSTTA H +G+LVPLLTEAGAV
Sbjct:   48 ESDGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLLTEAGAV 102          
BLAST of CX300371 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.490e-22
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 2
Query:    8 ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVA-KTA 184
            ESDGS IQS LAEWTGQ+TVPNVFIGG HIGGCD+T+ LH++GKLVPLLTEAGA+A KTA
Sbjct:   48 ESDGSQIQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVPLLTEAGAIAGKTA 107          
BLAST of CX300371 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.495e-19
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 2
Query:    8 ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVA 175
            ESDGS++QSALA+WTGQ+TVP VFI GKHIGGCD T A+H+ G LVPLLTEAGA+A
Sbjct:   74 ESDGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLLTEAGAIA 129          
BLAST of CX300371 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.399e-17
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 2
Query:   11 SDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTAA 187
            SDG +IQSAL+EWTGQ TVPNVFI G HIGGCD     +++GKLVPLLTEAGA+A  ++
Sbjct:   65 SDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLLTEAGAIADNSS 123          
BLAST of CX300371 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 2
Query:    8 ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAG 166
            ESDGS++QSA  + +G +TVP VFI  K IGGCD+TT LH +GKL+PLL EAG
Sbjct:   46 ESDGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIPLLQEAG 98          
BLAST of CX300371 vs. ExPASy Swiss-Prot
Match: GRS12_ARATH (Monothiol glutaredoxin-S12, chloroplastic OS=Arabidopsis thaliana GN=GRXS12 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.957e-11
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 2
Query:   11 SDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEA 163
            S+GS +Q+ L + TGQ TVPNVFIGGKHIGGC  T  LH +G+L  +L EA
Sbjct:  122 SEGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNKGELEAILAEA 172          
BLAST of CX300371 vs. ExPASy Swiss-Prot
Match: GRS10_ORYSJ (Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. japonica GN=GRXS10 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.438e-11
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 2
Query:   11 SDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTE 160
            + G  +Q  L   TGQ TVPNVFIGGKHIGGC  T  LHR+G+L  +L+E
Sbjct:  107 AQGPQLQKVLERLTGQSTVPNVFIGGKHIGGCTDTVKLHRKGELATMLSE 156          
The following BLAST results are available for this feature:
BLAST of CX300371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
GLRX_SOLLC3.439e-2481.97Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GLRX_VERFO3.802e-2382.46Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GRXC6_ORYSJ2.465e-2281.36Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GLRX_RICCO2.465e-2287.27Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GRXC2_ARATH5.490e-2281.67Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GRXC4_ORYSJ1.495e-1976.79Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GRXC1_ARATH1.399e-1767.80Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
GLRX_DICDI2.731e-1364.15Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
GRS12_ARATH1.957e-1160.78Monothiol glutaredoxin-S12, chloroplastic OS=Arabi... [more]
GRS10_ORYSJ7.438e-1158.00Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. ... [more]
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Properties
Property NameValue
Genbank descriptionC07009D09SK SaltLeaf1 Citrus clementina cDNA clone C07009D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300371 ID=CX300371; Name=CX300371; organism=Citrus clementina; type=EST; length=419bp
GAACAAAGAAAGTGATGGAAGTGACATTCAATCAGCTCTAGCTGAGTGGA
CTGGACAGAAAACTGTTCCAAATGTCTTCATCGGAGGGAAACACATTGGT
GGCTGCGATTCAACTACTGCACTGCACAGGGAAGGGAAGCTGGTTCCTCT
GCTCACTGAAGCTGGAGCTGTTGCCAAGACAGCTGCCTGATGGATGGCTA
TTGTCTGCCTGTTAATTCTAGTAATAAATAAAGAATGTGTTGGTAGTGCT
TAATCTGTCTGAATTAAACATGAAATTATGCTTATTTGAGTAATTTCCAA
TGCACTTTTTTGTTCAGTTTCTGTTTTATGTTGAAATCTGTATGAATTTT
ATCAGATTTTTCATCTACTATATCCATGTAGAGTCATTTCTACTGTAAAA
AAAAAAAAAAAAAAAAAAA
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