CX300374

Overview
NameCX300374
Unique NameCX300374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14793 contig Ccv1_Contig14793:279..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300374 vs. ExPASy Swiss-Prot
Match: OLEE1_BETVE (Olee1-like protein OS=Betula verrucosa PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.998e-17
Identity = 39/99 (39.39%), Postives = 64/99 (64.65%), Query Frame = 2
Query:    2 VECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPG---RERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLR 289
            +EC++R+   ++YS + +TD +GTY+I V  DH++++C+  L  S   DC  V+     ++ +R+ LT  NGIS+  R AN +GFMK +P+  CA+ LR
Sbjct:   57 LECRNREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVSKDPFLKKSARISLTKNNGISTPVRLANPLGFMKKKPLPECAKALR 155          
BLAST of CX300374 vs. ExPASy Swiss-Prot
Match: PHLB_PHLPR (Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.010e-15
Identity = 39/103 (37.86%), Postives = 57/103 (55.34%), Query Frame = 2
Query:    2 VECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPMSGCAEVLRLYQEED 307
            V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS NGI  +  RYAN + F + EP+  C  +L+ Y   D
Sbjct:   36 VDCRPFNGGESKLKAEATTDGLGWYKIEIDQDHQEEICEVVLAKSPDTTCSEIEEFRDRARVPLTSNNGIKQQGIRYANPIAFFRKEPLKECGGILQAYDLRD 138          
BLAST of CX300374 vs. ExPASy Swiss-Prot
Match: LAT52_SOLLC (Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.724e-15
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 2
Query:    2 VECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVL 286
            ++C++  +    +S EG TD  G YK+ V+ DH++ +C+  ++ SP+ DCK    G E++R+  +   GI +  R+AN + FMKAE + GC E L
Sbjct:   57 LQCRNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKESVSGYEKARIECSDNVGIHNAVRFANPLFFMKAESVQGCKEAL 151          
BLAST of CX300374 vs. ExPASy Swiss-Prot
Match: PSC13_MAIZE (Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.015e-15
Identity = 38/102 (37.25%), Postives = 62/102 (60.78%), Query Frame = 2
Query:    2 VECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEED 307
            +ECK   + ++  + +G TD+TGTY I + + H++ +C  VL++SP+ DC  V   R+R+ V+LT   GIS   R AN +G+ K  P+  CA +L+    +D
Sbjct:   65 LECKHFGTGKLERAIDGVTDATGTYTIELKDSHEEDICQVVLVASPRKDCDEVQALRDRAGVLLTRNVGISDSLRPANPLGYFKDVPLPVCAALLKQLDSDD 166          
BLAST of CX300374 vs. ExPASy Swiss-Prot
Match: LOLB_LOLPR (Major pollen allergen Lol p 11 OS=Lolium perenne PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.459e-14
Identity = 37/99 (37.37%), Postives = 55/99 (55.56%), Query Frame = 2
Query:    2 VECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPMSGCAEVLRLY 295
            V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS  GI  +  RYAN + F + EP+  C  +L+ Y
Sbjct:   36 VDCRPFDGGESKLKAEATTDKDGWYKIEIDQDHQEEICEVVLAKSPDKSCSEIEEFRDRARVPLTSNXGIKQQGIRYANPIAFFRKEPLKECGGILQAY 134          
BLAST of CX300374 vs. ExPASy Swiss-Prot
Match: CHE1_CHEAL (Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.545e-14
Identity = 38/106 (35.85%), Postives = 62/106 (58.49%), Query Frame = 2
Query:    2 VECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAP---GRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEEDV 310
            +EC++  +    +  E  TD  G Y I V+ D +D +C+  L+ SP ++C  V+     ++ ++V LTS NG +S+ R AN++GFM+ EP+  C EVL+     DV
Sbjct:   60 LECRNITAGTQTFKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVSHDVYAKQSAKVSLTSNNGEASDIRSANALGFMRKEPLKECPEVLKELDLYDV 165          
BLAST of CX300374 vs. ExPASy Swiss-Prot
Match: ALL1_OLEEU (Major pollen allergen OS=Olea europaea PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.393e-11
Identity = 30/94 (31.91%), Postives = 51/94 (54.26%), Query Frame = 2
Query:    2 VECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEV 283
            ++CKD+++  V ++  G T + G Y +LV  DH+++ C+  LISS + DC  +         +    N ++  TR  N +GF K E +  CA+V
Sbjct:   41 LQCKDKENGDVTFTEVGYTRAEGLYSMLVERDHKNEFCEITLISSGRKDCNEIPTEGWAKPSLKFKLNTVNGTTRTVNPLGFFKKEALPKCAQV 134          
The following BLAST results are available for this feature:
BLAST of CX300374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
OLEE1_BETVE6.998e-1739.39Olee1-like protein OS=Betula verrucosa PE=2 SV=1[more]
PHLB_PHLPR1.010e-1537.86Pollen allergen Phl p 11 OS=Phleum pratense PE=1 S... [more]
LAT52_SOLLC1.724e-1536.84Anther-specific protein LAT52 OS=Solanum lycopersi... [more]
PSC13_MAIZE5.015e-1537.25Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE... [more]
LOLB_LOLPR1.459e-1437.37Major pollen allergen Lol p 11 OS=Lolium perenne P... [more]
CHE1_CHEAL5.545e-1435.85Pollen allergen Che a 1 OS=Chenopodium album PE=1 ... [more]
ALL1_OLEEU4.393e-1131.91Major pollen allergen OS=Olea europaea PE=1 SV=2[more]
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Properties
Property NameValue
Genbank descriptionC07009D12SK SaltLeaf1 Citrus clementina cDNA clone C07009D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300374 ID=CX300374; Name=CX300374; organism=Citrus clementina; type=EST; length=361bp
GGTTGAATGCAAAGACAGGAAGTCAATGCAAGTAGTATATAGCAGGGAAG
GGAAAACAGACTCAACTGGAACATATAAGATCCTCGTTTCAGAAGACCAT
CAGGATCAACTTTGCGATGCTGTCCTCATTAGTAGCCCCCAGAATGACTG
CAAAACAGTTGCCCCAGGGCGTGAGCGTTCCCGTGTGATCTTGACCAGTT
ACAACGGCATTTCTTCTGAAACCCGATATGCCAATTCAATGGGCTTCATG
AAGGCAGAGCCCATGTCTGGCTGTGCTGAGGTTCTCAGGCTATATCAGGA
GGAGGATGTGTAGAGAATGGTGTGGCATGGTTTTTTCTATCGCTTTCCAT
TTGTTTAAGCT
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