CX300375

Overview
NameCX300375
Unique NameCX300375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length541
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300375_ssr343 microsatellite CX300375_ssr343:343..352. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX300375 vs. ExPASy Swiss-Prot
Match: PTBP3_ARATH (Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.600e-32
Identity = 65/79 (82.28%), Postives = 75/79 (94.94%), Query Frame = 3
Query:    3 TKMIHLSTLPQDVTEEEIVSHLEEHGTIVNTKLFEMNGKKQALVLFETEEQATEALVCKHASSLGGSIIRISFSQLQSI 239
            TKMIHLSTLPQDVTEEE+++H++EHG +VNTK+FEMNGKKQALV FE EE+A EALVCKHA+SLGGSIIRISFSQLQ+I
Sbjct:  354 TKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEALVCKHATSLGGSIIRISFSQLQTI 432          
The following BLAST results are available for this feature:
BLAST of CX300375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PTBP3_ARATH6.600e-3282.28Polypyrimidine tract-binding protein homolog 3 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC07009E01SK SaltLeaf1 Citrus clementina cDNA clone C07009E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300375 ID=CX300375; Name=CX300375; organism=Citrus clementina; type=EST; length=541bp
CAACAAAGATGATCCACCTTTCCACTTTACCACAAGATGTTACTGAAGAG
GAAATTGTGAGCCACCTGGAGGAGCATGGCACCATTGTGAATACCAAGCT
CTTTGAGATGAATGGGAAGAAGCAGGCCTTGGTCCTCTTTGAAACCGAGG
AGCAGGCCACTGAAGCCCTTGTGTGCAAGCATGCTAGCTCACTTGGCGGG
TCTATAATCCGAATCTCCTTCTCCCAGTTACAGTCAATAAGGGAAAACTC
GCAGTAAAACATTGACTATTTGCTAAGCCACGTGAGTTAAGGATTCATAT
AAACAAGGACATTTTGATATTTGGTCAATTTGAAGAGTAGAAAGAGAGAG
AGAATTGTACTACCTTTTCCTGAGCTAGGGCTTTCAAAGTTTCATGTATT
ATTAGTTGTAAATATCTTTGTATTTCATGCTGATGGGGTTGGTACTGTTG
TATTCTGAATTCATAAACCAAACCTCATTTGTCCCAGTTGATTTATGATC
TAAAAAGAATTTTGCTTCCAGTCCAAAAAAAAAAAAAAAAA
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