CX300379

Overview
NameCX300379
Unique NameCX300379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length458
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9703 contig Ccv1_Contig9703:28..478. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300379 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 4.150e-20
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 1
Query:   70 MSDTCGNCDCADRSQCVKKGSSYAADFVETD 162
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETE 31          

HSP 2 Score: 54.6842 bits (130), Expect = 4.150e-20
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = 3
Query:  192 VVMDVQAAETEGNCKCGPTCACVNCTCG 275
            VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:   37 VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CX300379 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 3.353e-15
Identity = 25/34 (73.53%), Postives = 26/34 (76.47%), Query Frame = 1
Query:   70 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLRY 171
            MSD CGNCDCAD SQCVKKG+S   D VETD  Y
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSY 32          

HSP 2 Score: 47.7506 bits (112), Expect = 3.353e-15
Identity = 19/27 (70.37%), Postives = 21/27 (77.78%), Query Frame = 3
Query:  192 VVMDVQAAETEGNCKCGPTCACVNCTC 272
            VVM V AAE+ G CKCG +C CVNCTC
Sbjct:   36 VVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CX300379 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 5.666e-15
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 1
Query:   79 TCGNCDCADRSQCVKKGSSYAADFVETDLRY 171
            TCGNCDC D+SQCVKKG+SY  D VET+  Y
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSY 33          

HSP 2 Score: 44.669 bits (104), Expect = 5.666e-15
Identity = 18/35 (51.43%), Postives = 24/35 (68.57%), Query Frame = 3
Query:  174 SFVSTVVVMDVQAAETEGNCKCGPTCACVNCTCGS 278
            S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:   32 SYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CX300379 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 1.318e-13
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 3
Query:  192 VVMDVQAAETEGNCKCGPTCACVNCTC 272
            V+MD  AAE  GNCKCGP+CACV+C C
Sbjct:   38 VIMDAPAAENGGNCKCGPSCACVDCKC 64          

HSP 2 Score: 44.669 bits (104), Expect = 1.318e-13
Identity = 19/33 (57.58%), Postives = 22/33 (66.67%), Query Frame = 1
Query:   70 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLR 168
            MS  C NCDC+D SQC KKG S+    VET+ R
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENR 33          
BLAST of CX300379 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 4.883e-13
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 1
Query:   70 MSDTCGNCDCADRSQCVKKGSSYAADFVETD 162
            MSD CGNCDCAD+SQCVKKG+SY    VE +
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAE 31          

HSP 2 Score: 39.6614 bits (91), Expect = 4.883e-13
Identity = 13/25 (52.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  201 DVQAAETEGNCKCGPTCACVNCTCG 275
            +V A E  G CKCG +C+C +C CG
Sbjct:   37 EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CX300379 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 4.883e-13
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 1
Query:   70 MSDTCGNCDCADRSQCVKKGSSYAADFVETD 162
            MSD CGNCDCAD+SQCVKKG+SY    VE +
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAE 31          

HSP 2 Score: 39.6614 bits (91), Expect = 4.883e-13
Identity = 13/25 (52.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  201 DVQAAETEGNCKCGPTCACVNCTCG 275
            +V A E  G CKCG +C+C +C CG
Sbjct:   37 EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CX300379 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 4.883e-13
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 1
Query:   70 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLR 168
            MS  C NCDCAD +QCVKKG+SY    VET+ R
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENR 33          

HSP 2 Score: 45.8246 bits (107), Expect = 4.883e-13
Identity = 17/28 (60.71%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  192 VVMDVQAAETEGNCKCGPTCACVNCTCG 275
            V +D  AAE +G CKCG  C+CV+CTCG
Sbjct:   38 VFVDAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CX300379 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 7.045e-11
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 1
Query:   70 MSDTCGNCDCADRSQCVKKGSSYAADFVETD 162
            MSD CGNCDCAD+SQCVKKG+SY    V+ +
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAE 31          

HSP 2 Score: 33.4982 bits (75), Expect = 7.045e-11
Identity = 11/25 (44.00%), Postives = 14/25 (56.00%), Query Frame = 3
Query:  201 DVQAAETEGNCKCGPTCACVNCTCG 275
            +V   E +G CKC   C+C  C CG
Sbjct:   40 EVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CX300379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MT3_CARPA4.150e-2080.65Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE3.353e-1573.53Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC5.666e-1570.97Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV1.318e-1370.37Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3A_ORYSJ4.883e-1370.97Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI4.883e-1370.97Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3_MALDO4.883e-1363.64Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3B_ORYSJ7.045e-1167.74Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionC07009E08SK SaltLeaf1 Citrus clementina cDNA clone C07009E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300379 ID=CX300379; Name=CX300379; organism=Citrus clementina; type=EST; length=458bp
AAGCAAGTTTCGTACAATAAAGAGCCCTCTATTTCCAGTTTTAAGTTCCA
AGTTCTAAGCTCAATCAACATGTCGGACACCTGCGGCAACTGCGACTGCG
CTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTATGCTGCTGACTTC
GTCGAGACTGACTTGAGGTATGCAGCTTTGTCAGCACCGTTGTTGTCATG
GACGTTCAGGCTGCTGAGACTGAAGGTAACTGCAAGTGCGGCCCCACCTG
CGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACACATGCA
GCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTTAAGAA
TAATGTAAGGGTGATTAAAAAAAAAAGAAAAATTCTCTACTTCGTTTTTA
TGATGGTCTACTACTAATGTGTGGAGTGATGTGCGTGTTGTGTCACCCAT
CACTCGTA
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