CX300384

Overview
NameCX300384
Unique NameCX300384
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8768 contig Ccv1_Contig8768:314..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300384 vs. ExPASy Swiss-Prot
Match: VP321_ARATH (Vacuolar protein sorting-associated protein 32 homolog 1 OS=Arabidopsis thaliana GN=VPS32.1 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.460e-41
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 3
Query:    3 CLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 263
            CLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS P G
Sbjct:   63 CLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPFG 149          
BLAST of CX300384 vs. ExPASy Swiss-Prot
Match: VP322_ARATH (Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 4.623e-40
Identity = 81/87 (93.10%), Postives = 85/87 (97.70%), Query Frame = 3
Query:    3 CLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 263
            CLKRKRLYE Q+EQLGNFQLRIHDQMIMLEGAKATTETVDALR+GAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEAL+TP+G
Sbjct:   62 CLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPMG 148          
BLAST of CX300384 vs. ExPASy Swiss-Prot
Match: SNF7_KLULA (Vacuolar-sorting protein SNF7 OS=Kluyveromyces lactis GN=SNF7 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.073e-12
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 3
Query:    6 LKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 260
            LK+K+LYE Q+++L +    +  Q+  +E A    ET+ A++ GAS MK + K  ++D VD TMDEI EQ E  ++I EA+S P+
Sbjct:   64 LKKKKLYESQLDKLQSQIDSLDQQLYSIENANLNLETLKAMKQGASAMKNIHKGLDLDKVDDTMDEIREQVELNQEISEAISKPL 148          
BLAST of CX300384 vs. ExPASy Swiss-Prot
Match: SNF7_CANAL (Vacuolar-sorting protein SNF7 OS=Candida albicans GN=SNF7 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.550e-11
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 3
Query:    6 LKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 263
            LKRK+ YE  + ++ N    +  Q+I +EGA    ET+ A++ GA  MK +    ++D V+ TMDEI EQ E   +I EA+S P+G
Sbjct:   65 LKRKKGYESNLLKVENQIETLETQLISIEGANLNLETMKAMKQGAKAMKQIHGEYDVDKVEDTMDEIREQVELADEISEAISRPVG 150          
BLAST of CX300384 vs. ExPASy Swiss-Prot
Match: SNF7_CANGA (Vacuolar-sorting protein SNF7 OS=Candida glabrata GN=SNF7 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.643e-11
Identity = 33/85 (38.82%), Postives = 54/85 (63.53%), Query Frame = 3
Query:    6 LKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 260
            LK+K++YE Q+ +L +    +  Q+  +E A    ET+ A++ GA  MK++    +ID VD+TMDEI EQ E  ++I +A+S P+
Sbjct:   65 LKKKKVYEGQLVKLESQMDSLEQQLFSIESANLNLETMRAMKQGAKAMKSIHSGLDIDRVDETMDEIREQVELGEEISDAISRPL 149          
BLAST of CX300384 vs. ExPASy Swiss-Prot
Match: SNF7_ASHGO (Vacuolar-sorting protein SNF7 OS=Ashbya gossypii GN=SNF7 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.691e-11
Identity = 32/85 (37.65%), Postives = 54/85 (63.53%), Query Frame = 3
Query:    6 LKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 260
            LKRK+++E Q+ ++      +  Q+  +E A    ET+ A++ GAS MK + +  +++ VD+TMDEI EQ E  ++I EA+S P+
Sbjct:   66 LKRKKVFESQLLKIDKQVDSLEQQLYSIENANLNLETMKAMKQGASAMKHIHEGLDVERVDETMDEIREQVELGEEISEAISRPL 150          
The following BLAST results are available for this feature:
BLAST of CX300384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
VP321_ARATH5.460e-4195.40Vacuolar protein sorting-associated protein 32 hom... [more]
VP322_ARATH4.623e-4093.10Vacuolar protein sorting-associated protein 32 hom... [more]
SNF7_KLULA1.073e-1242.35Vacuolar-sorting protein SNF7 OS=Kluyveromyces lac... [more]
SNF7_CANAL1.550e-1140.70Vacuolar-sorting protein SNF7 OS=Candida albicans ... [more]
SNF7_CANGA2.643e-1138.82Vacuolar-sorting protein SNF7 OS=Candida glabrata ... [more]
SNF7_ASHGO7.691e-1137.65Vacuolar-sorting protein SNF7 OS=Ashbya gossypii G... [more]
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Properties
Property NameValue
Genbank descriptionC07009F01SK SaltLeaf1 Citrus clementina cDNA clone C07009F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300384 ID=CX300384; Name=CX300384; organism=Citrus clementina; type=EST; length=518bp
AATGTTTGAAGAGGAAGAGGCTATACGAACAGCAAATAGAGCAGCTTGGG
AATTTCCAATTGCGCATTCATGATCAGATGATAATGCTAGAAGGTGCTAA
AGCCACAACTGAGACTGTAGATGCATTGAGGACGGGAGCATCGACAATGA
AGGCTATGCAGAAAGCAACGAACATAGATGATGTGGATAAGACCATGGAT
GAGATCAATGAGCAGACCGAGAACATGAAGCAGATTCAAGAAGCATTATC
AACTCCTATTGGTGCTGCTGCTGATTTCGATGAGGATGAATTGGAAGCAG
AACTTGAAGAACTGGAAGGTGCTGAGTTGGAAGAGCAGCTTCTACAGCCA
GCTACAACAGCTCCTGCTGCTCCGGTTCAGGTCCCTGCTGGCAGGCAACA
AGCCCGTCCTGTTCCCCAAAAGCAGCGAACAGCTGAGGAAGATGAGCTTG
CTGCTTTACAAGCTGAGATGGCTCTTTAAGCAGGTTTTACCGCCATAATG
AAGATATTATTTAAATAG
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