CX300390

Overview
NameCX300390
Unique NameCX300390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length499
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8146 contig Ccv1_Contig8146:909..1407. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300390 vs. ExPASy Swiss-Prot
Match: TPT_SPIOL (Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.562e-58
Identity = 112/137 (81.75%), Postives = 120/137 (87.59%), Query Frame = 1
Query:    1 MTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXXYSYIKAQMEEEKRQMKA 411
            MTDMDSTNIYAYISIIALFVC+PPAIIVEGPQL+KHG +DAI+KVG+ KFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSI+AFGNKISTQ              YS IKA+MEEEKRQMK+
Sbjct:  267 MTDMDSTNIYAYISIIALFVCLPPAIIVEGPQLMKHGFNDAIAKVGLTKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIIAFGNKISTQTAIGTSIAIAGVALYSLIKAKMEEEKRQMKS 403          
BLAST of CX300390 vs. ExPASy Swiss-Prot
Match: TPT1_BRAOB (Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 3.847e-57
Identity = 110/138 (79.71%), Postives = 118/138 (85.51%), Query Frame = 1
Query:    1 MTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXXYSYIKAQMEEEKRQMKAA 414
            MTDMDSTN+YAYISIIALFVC+PPAIIVEGPQL+KHG +DAI+KVGM KFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ              YS IKA++EEEKRQ K A
Sbjct:  270 MTDMDSTNVYAYISIIALFVCLPPAIIVEGPQLLKHGFNDAIAKVGMTKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIVIFGNKISTQTGIGTGIAIAGVALYSVIKAKIEEEKRQGKTA 407          
BLAST of CX300390 vs. ExPASy Swiss-Prot
Match: TPT_PEA (Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 5.555e-56
Identity = 107/138 (77.54%), Postives = 118/138 (85.51%), Query Frame = 1
Query:    1 MTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXXYSYIKAQMEEEKRQMKAA 414
            MTDMDSTNIYAYISIIAL VCIPPA+I+EGP L+K G +DAI+KVG+VKF+SDLFWVGMFYHLYNQ+ATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ              YS+IKAQ+EEEKRQ KAA
Sbjct:  265 MTDMDSTNIYAYISIIALIVCIPPALIIEGPTLLKTGFNDAIAKVGLVKFVSDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIIIFGNKISTQTGIGTGIAIAGVALYSFIKAQIEEEKRQAKAA 402          
BLAST of CX300390 vs. ExPASy Swiss-Prot
Match: TPT_FLATR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria trinervia GN=TPT PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 5.555e-56
Identity = 105/138 (76.09%), Postives = 118/138 (85.51%), Query Frame = 1
Query:    1 MTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXXYSYIKAQMEEEKRQMKAA 414
            MTDMDSTN+YAYISIIAL  CIPPA++ EGPQL+KHG +DAI+KVGM+KFISDLFWVGMFYHLYNQ+ATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ              YS IKA++EEEKR+MK+A
Sbjct:  270 MTDMDSTNLYAYISIIALLFCIPPAVLFEGPQLLKHGFNDAIAKVGMIKFISDLFWVGMFYHLYNQIATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTAIGTSIAIAGVAIYSLIKARIEEEKRRMKSA 407          
BLAST of CX300390 vs. ExPASy Swiss-Prot
Match: TPT_SOLTU (Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 2.757e-55
Identity = 103/138 (74.64%), Postives = 117/138 (84.78%), Query Frame = 1
Query:    1 MTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXXYSYIKAQMEEEKRQMKAA 414
            MTDMDSTN+YAYISIIAL  C+PPAI +EGPQL++HG +DAI+KVG+ KF++DLFWVGMFYHLYNQ+ATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ              YS+IKA+MEEEKRQ KAA
Sbjct:  277 MTDMDSTNVYAYISIIALIFCLPPAIFIEGPQLLQHGFNDAIAKVGLTKFVTDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIVIFGNKISTQTGIGTCIAIAGVAIYSFIKAKMEEEKRQKKAA 414          
BLAST of CX300390 vs. ExPASy Swiss-Prot
Match: TPT_FLAPR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria pringlei GN=TPT PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 4.703e-55
Identity = 106/138 (76.81%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 MTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXXYSYIKAQMEEEKRQMKAA 414
            MTDMDSTN+YAYISII+L  CIPPAII+EGPQL+KHG SDAI+KVGM KFISDLFWVGMFYHLYNQLA NTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ              YS IKA++EEEKR +K+A
Sbjct:  271 MTDMDSTNLYAYISIISLLFCIPPAIILEGPQLLKHGFSDAIAKVGMTKFISDLFWVGMFYHLYNQLAINTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTAIGTSIAIAGVAVYSLIKAKIEEEKRGLKSA 408          
BLAST of CX300390 vs. ExPASy Swiss-Prot
Match: TPT_MAIZE (Triose phosphate/phosphate translocator, chloroplastic OS=Zea mays GN=TPT PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 5.749e-53
Identity = 101/137 (73.72%), Postives = 115/137 (83.94%), Query Frame = 1
Query:    1 MTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXXYSYIKAQMEEEKRQMKA 411
            MTDMDSTN+YAYISIIAL VCIPPA+I EGP+L++HG SDAI+KVG+ KF+SDLF VG+FYHLYNQ+ATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ              YSYIKA++EEEKR+  A
Sbjct:  273 MTDMDSTNVYAYISIIALIVCIPPALIFEGPKLMQHGFSDAIAKVGLTKFVSDLFLVGLFYHLYNQIATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTGIGTSIAIAGVAMYSYIKAKIEEEKRKKSA 409          
BLAST of CX300390 vs. ExPASy Swiss-Prot
Match: GPT1_ARATH (Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.611e-13
Identity = 39/92 (42.39%), Postives = 62/92 (67.39%), Query Frame = 1
Query:   22 NIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAF 297
            N YA +S+++L +  P AI VEGPQ+   G   A++ VG  +F+  +    +FYHLYNQ++  +L++++PLT +VGN +KR+ VI  SI+ F
Sbjct:  271 NYYACLSMLSLLILTPFAIAVEGPQMWVDGWQTALATVGP-QFVWWVVAQSVFYHLYNQVSYMSLDQISPLTFSVGNTMKRISVIVSSIIIF 361          
BLAST of CX300390 vs. ExPASy Swiss-Prot
Match: GPT2_ARATH (Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.296e-12
Identity = 39/99 (39.39%), Postives = 65/99 (65.66%), Query Frame = 1
Query:   22 NIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWV---GMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKI 309
            N YA +S+++L +  P +I VE PQ+   G  +A+S+VG     + ++WV    +FYHLYNQ++  +L++++PLT ++GN +KR+ VI  SI+ F   I
Sbjct:  271 NYYACLSMMSLVILTPFSIAVEVPQMWAAGWQNAVSQVGP----NFVWWVVAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVASIIIFHTPI 365          
The following BLAST results are available for this feature:
BLAST of CX300390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TPT_SPIOL1.562e-5881.75Triose phosphate/phosphate translocator, chloropla... [more]
TPT1_BRAOB3.847e-5779.71Triose phosphate/phosphate translocator, chloropla... [more]
TPT_PEA5.555e-5677.54Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLATR5.555e-5676.09Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SOLTU2.757e-5574.64Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLAPR4.703e-5576.81Triose phosphate/phosphate translocator, chloropla... [more]
TPT_MAIZE5.749e-5373.72Triose phosphate/phosphate translocator, chloropla... [more]
GPT1_ARATH2.611e-1342.39Glucose-6-phosphate/phosphate translocator 1, chlo... [more]
GPT2_ARATH1.296e-1239.39Glucose-6-phosphate/phosphate translocator 2, chlo... [more]
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Properties
Property NameValue
Genbank descriptionC07009F09SK SaltLeaf1 Citrus clementina cDNA clone C07009F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300390 ID=CX300390; Name=CX300390; organism=Citrus clementina; type=EST; length=499bp
ATGACTGATATGGACAGTACTAATATTTATGCCTATATTTCCATCATTGC
GCTCTTTGTCTGTATTCCACCAGCCATCATTGTTGAGGGACCTCAACTGA
TTAAGCATGGCTTAAGTGATGCAATTTCCAAAGTGGGCATGGTCAAGTTC
ATTTCAGATCTTTTTTGGGTGGGGATGTTTTACCACCTCTACAATCAGTT
GGCTACCAACACCTTGGAGAGGGTTGCACCTCTTACTCATGCAGTTGGCA
ATGTACTGAAACGTGTGTTTGTGATTGGGTTCTCAATCCTGGCCTTTGGC
AACAAGATCTCAACCCAAACTGGTATTGGAACAGTCATTGCAATTGCTGG
AGTGGCAGCCTACTCTTACATCAAGGCCCAAATGGAAGAAGAGAAACGAC
AAATGAAAGCAGCATGAGAAGAAAAGAAGCATGTGAATGAGGAAAGGTCC
CGATGTAAAGTCGTGCTACTTTTTCCCCCAAAGATCAAAATGACAAATT
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