CX300394

Overview
NameCX300394
Unique NameCX300394
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length499
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300394 vs. ExPASy Swiss-Prot
Match: PR1A1_ARATH (PRA1 family protein A1 OS=Arabidopsis thaliana GN=PRA1A1 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 9.178e-51
Identity = 96/123 (78.05%), Postives = 107/123 (86.99%), Query Frame = 1
Query:    1 IAFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 369
            +AFLNDSFAG+F+EK TRTVR+FSP LAAKMRPPLTPV RGRPS+KRAI++CG+PRWVFVL  S VSF LWY+S GLL V  AL +  LATILHAS RTPNLKAR NTFREEFRAVWRNYSE+
Sbjct:   87 LAFLNDSFAGSFSEKATRTVRRFSPQLAAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSFALWYISSGLLRVSVALLIAHLATILHASLRTPNLKARFNTFREEFRAVWRNYSEI 209          
BLAST of CX300394 vs. ExPASy Swiss-Prot
Match: PR1A3_ARATH (PRA1 family protein A3 OS=Arabidopsis thaliana GN=PRA1A3 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.240e-47
Identity = 89/123 (72.36%), Postives = 102/123 (82.93%), Query Frame = 1
Query:    1 IAFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 369
            +AFLNDSFA TFNEK+ RT+R FSPHLAAKMRPP  PVIRGR + ++ +YICG+PR VFVL+    SF+LW+ SCGLL VL+AL   LL  +LHAS RTPNLKARLNTFREEFRAVWRNYSEL
Sbjct:   87 LAFLNDSFAATFNEKMIRTIRHFSPHLAAKMRPPHMPVIRGRSATRKTVYICGQPRLVFVLLGLTASFVLWFTSCGLLWVLYALTTALLMILLHASLRTPNLKARLNTFREEFRAVWRNYSEL 209          
BLAST of CX300394 vs. ExPASy Swiss-Prot
Match: PR1A2_ARATH (PRA1 family protein A2 OS=Arabidopsis thaliana GN=PRA1A2 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.620e-47
Identity = 86/123 (69.92%), Postives = 101/123 (82.11%), Query Frame = 1
Query:    1 IAFLNDSFAGTFNEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIYICGRPRWVFVLIFSCVSFILWYVSCGLLTVLWALAVGLLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL 369
            IAFLNDSFA +FNEK  RT+R FSPH+AAKMRPP  PVIRGR +A++ +Y+CG+PRWVFV+ F   S ++W+ SCGLL VL+AL   L   I+HAS RTPNLKARLNTFREEFRAVWRNYSEL
Sbjct:   87 IAFLNDSFAASFNEKFIRTIRHFSPHMAAKMRPPHMPVIRGRSTARKTVYVCGKPRWVFVITFLTASLVMWFSSCGLLWVLYALLTSLAVIIVHASIRTPNLKARLNTFREEFRAVWRNYSEL 209          
The following BLAST results are available for this feature:
BLAST of CX300394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PR1A1_ARATH9.178e-5178.05PRA1 family protein A1 OS=Arabidopsis thaliana GN=... [more]
PR1A3_ARATH1.240e-4772.36PRA1 family protein A3 OS=Arabidopsis thaliana GN=... [more]
PR1A2_ARATH1.620e-4769.92PRA1 family protein A2 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionC07009G01SK SaltLeaf1 Citrus clementina cDNA clone C07009G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300394 ID=CX300394; Name=CX300394; organism=Citrus clementina; type=EST; length=499bp
ATTGCATTTCTCAATGACAGCTTTGCAGGTACTTTCAATGAGAAGGTGAC
AAGAACTGTGAGGCAATTTTCTCCACATCTAGCTGCAAAGATGAGGCCTC
CTCTTACACCTGTTATTCGTGGGCGCCCATCAGCGAAAAGAGCAATCTAT
ATATGTGGTCGGCCTCGTTGGGTGTTTGTCTTAATATTTTCTTGCGTAAG
TTTCATCCTTTGGTATGTTTCCTGTGGTCTTTTGACTGTTCTATGGGCAC
TTGCTGTTGGACTTCTTGCCACTATCCTTCATGCAAGTTTTCGAACTCCC
AACTTGAAAGCACGTCTGAATACATTCAGAGAGGAATTCCGTGCTGTTTG
GCGCAATTATAGTGAGCTGTAGCTGATACGCCTCTGTAGGAAGAGCTGCC
TTTTTCGTTGCGAGGTTCATACAGCCTGTTGTTCTGGATTGGCCTTAATT
GCTTCTTCTGTTTGCTATAAAATAATTGCATGTCTTGAATAGAATTCTC
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