CX300395

Overview
NameCX300395
Unique NameCX300395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300395_ssr36 microsatellite CX300395_ssr36:36..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX300395 vs. ExPASy Swiss-Prot
Match: YJ2B_SCHPO (Uncharacterized bolA-like protein C4B3.11c OS=Schizosaccharomyces pombe GN=SPCC4B3.11c PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.636e-13
Identity = 32/67 (47.76%), Postives = 51/67 (76.12%), Query Frame = 3
Query:   90 KEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSI 290
            + +++  LT KL+PS L VID SGGCG+ +++ I S+ F+GK  LA+HRLVN+ L+EE++ +H L++
Sbjct:   33 ERRIKDILTEKLSPSSLRVIDVSGGCGSMYQVAIKSKAFQGKNTLAQHRLVNSILKEEIRNMHGLNL 99          
BLAST of CX300395 vs. ExPASy Swiss-Prot
Match: YETB_SCHPO (Uncharacterized bolA-like protein C8C9.11 OS=Schizosaccharomyces pombe GN=SPAC8C9.11 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.761e-13
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 3
Query:   84 VTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALS 287
            V  +++E  + + L P+H+E+ D SGGCG  FE+ IVS  FEGK  LARHRLVN  L+E +K IHA +
Sbjct:    2 VNAQQLELLIQNTLEPTHIEIQDMSGGCGQNFEVIIVSPLFEGKSTLARHRLVNHKLQEVIKDIHAFT 69          
BLAST of CX300395 vs. ExPASy Swiss-Prot
Match: BOLA2_HUMAN (BolA-like protein 2 OS=Homo sapiens GN=BOLA2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.086e-12
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 3
Query:   78 MGVTKEKVESTLTSKLNPSHLEVIDTS-GGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQQQE 332
            M ++ E +   L   L   H+EV DT+   C   F + +VS +FEGK LL RHRLVNA L EE+  IHA   +K +TP+QW ++++
Sbjct:    1 MELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHRLVNACLAEELPHIHAFE-QKTLTPDQWARERQ 85          
BLAST of CX300395 vs. ExPASy Swiss-Prot
Match: BOLA2_MOUSE (BolA-like protein 2 OS=Mus musculus GN=Bola2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.875e-12
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 3
Query:   78 MGVTKEKVESTLTSKLNPSHLEVIDTS-GGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQQQ 329
            M ++ + +   L   L   H+EV DT+   C   F + +VS +FEGK LL RHRLVN  L EE+  IHA   +K +TPEQW +Q+
Sbjct:    1 MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPHIHAFE-QKTLTPEQWTRQR 84          
BLAST of CX300395 vs. ExPASy Swiss-Prot
Match: YGX0_YEAST (Uncharacterized bolA-like protein YGL220W OS=Saccharomyces cerevisiae GN=YGL220W PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.820e-11
Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 3
Query:   36 KERKQARVWELRVKMGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQ 323
            +E K+ R +++ V     +E++ES +       H+ V D S GCG  F+I +VS+ F+GK  L R R VN A++EE+++IHA S  K  T E+W +
Sbjct:   26 RETKRQRHYKMPVTEQGLRERIESAIPQVY---HIIVTDLSYGCGQSFDIVVVSDFFQGKSKLMRSRAVNKAVKEELQEIHAFSC-KCYTEEEWSK 117          
The following BLAST results are available for this feature:
BLAST of CX300395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
YJ2B_SCHPO1.636e-1347.76Uncharacterized bolA-like protein C4B3.11c OS=Schi... [more]
YETB_SCHPO4.761e-1351.47Uncharacterized bolA-like protein C8C9.11 OS=Schiz... [more]
BOLA2_HUMAN3.086e-1243.02BolA-like protein 2 OS=Homo sapiens GN=BOLA2 PE=1 ... [more]
BOLA2_MOUSE6.875e-1243.53BolA-like protein 2 OS=Mus musculus GN=Bola2 PE=1 ... [more]
YGX0_YEAST5.820e-1138.54Uncharacterized bolA-like protein YGL220W OS=Sacch... [more]
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Properties
Property NameValue
Genbank descriptionC07009G02SK SaltLeaf1 Citrus clementina cDNA clone C07009G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300395 ID=CX300395; Name=CX300395; organism=Citrus clementina; type=EST; length=582bp
GTTTTAAGCAGAAACCTAGAGCTAGAAGAAGCCAAAAAGAAAGAAAGCAA
GCAAGAGTTTGGGAATTGAGAGTTAAAATGGGCGTCACAAAAGAAAAAGT
TGAATCTACTTTGACTTCAAAACTCAACCCTTCTCATCTTGAAGTGATTG
ATACATCTGGTGGATGCGGTGCGAAATTTGAAATTGAGATTGTATCAGAA
CAATTCGAAGGCAAGAGGCTGCTGGCGAGGCACCGGCTAGTGAATGCTGC
CCTGGAAGAGGAGATGAAGCAAATCCATGCTCTCTCTATAAAGAAAGCTA
TGACCCCGGAGCAGTGGAAACAACAACAAGAGTCTAATGCTGCTGCTTAA
AAACATGCTCTTCAATATTACAGTCATCGCTTCAAGCTGAATGTGACTAA
ACTATAAACATAAAATGCATTTGGGAATAAATTTAGCACTTCTTGTAACT
TGGATCAATTTACTTAGTTATTACTGAATGTTCAAACTCTTTTAAAATTA
ACAATTTAGGCAACTGCTTTTCTCAAATTTAATGTGCTTTCTGTATCATG
CTATTATGGCATCAAAAAAAAAAAAAAAAAAA
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